View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_high_1 (Length: 560)
Name: NF21016_high_1
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 286 - 553
Target Start/End: Complemental strand, 42395679 - 42395412
Alignment:
| Q |
286 |
taacaattctctaataatcaatannnnnnnaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactat |
385 |
Q |
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| T |
42395679 |
taacaattctctaataatcaatatttttttaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactat |
42395580 |
T |
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| Q |
386 |
cagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggaga |
485 |
Q |
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| T |
42395579 |
cagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggaga |
42395480 |
T |
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| Q |
486 |
gaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttcatttca |
553 |
Q |
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| T |
42395479 |
gaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttcttttca |
42395412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 42395878 - 42395703
Alignment:
| Q |
99 |
tggttcttcttgtaactgcagccaaagaaactactgcaactgctaaaatggagctcaagaaagcaacaaccaggaaaaacacaagttttgcatgtaggat |
198 |
Q |
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| T |
42395878 |
tggttcttcttttaactgcagccaaagaaactactgcaactgctaaaatggagcacaagaaagcaacaaccaggaaaaacacaagttttgcatgtagggt |
42395779 |
T |
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| Q |
199 |
tcatgaacatggtaagtcacctctctaaatatttacctcacattagtgttagattagttatgtgttcgttggtctacttggatctat |
285 |
Q |
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| T |
42395778 |
tcatcaacatggtaagtcacctctctaaatatttacctcacat-----------tagttatgtgttcgttggtctacttggatctat |
42395703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 42395921 - 42395880
Alignment:
| Q |
16 |
aataacatatactcttcttctcatacacagccttcaattaat |
57 |
Q |
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| T |
42395921 |
aataacatatactcttcttctcatacacaaccttcaattaat |
42395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 542
Target Start/End: Original strand, 29295916 - 29296100
Alignment:
| Q |
358 |
attgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttca |
457 |
Q |
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| T |
29295916 |
attgcagtgaaattaggtcctaaattttctgagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttca |
29296015 |
T |
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| Q |
458 |
agaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctgg |
542 |
Q |
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| T |
29296016 |
agcatatttttgggatgcaagaggaagagaaactcttgaaagcttctcagtgctatttatataccacagctggtcctattgctgg |
29296100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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