View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21016_high_11 (Length: 244)

Name: NF21016_high_11
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21016_high_11
NF21016_high_11
[»] chr6 (5 HSPs)
chr6 (20-119)||(4367025-4367124)
chr6 (174-234)||(4367183-4367242)
chr6 (184-233)||(13648918-13648967)
chr6 (184-229)||(17290369-17290414)
chr6 (188-228)||(10685952-10685992)
[»] chr3 (3 HSPs)
chr3 (188-234)||(39176724-39176770)
chr3 (190-224)||(51842475-51842509)
chr3 (185-234)||(49492069-49492118)
[»] chr2 (1 HSPs)
chr2 (188-234)||(26423813-26423859)
[»] chr7 (3 HSPs)
chr7 (183-228)||(32026092-32026137)
chr7 (183-228)||(32034616-32034661)
chr7 (183-224)||(16371601-16371642)
[»] chr4 (5 HSPs)
chr4 (185-234)||(27979649-27979698)
chr4 (183-237)||(37255847-37255901)
chr4 (189-234)||(12591213-12591258)
chr4 (183-234)||(36669678-36669730)
chr4 (184-224)||(46959090-46959130)
[»] chr5 (2 HSPs)
chr5 (188-234)||(20205526-20205572)
chr5 (184-228)||(8646802-8646846)
[»] chr1 (5 HSPs)
chr1 (188-234)||(29823811-29823857)
chr1 (189-234)||(28943503-28943548)
chr1 (184-229)||(33417887-33417932)
chr1 (190-226)||(3336389-3336425)
chr1 (197-229)||(11745132-11745164)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 4367025 - 4367124
Alignment:
Q  20 attaccaacctatatcccacttactttttaccnnnnnnnncccactcaacacaattttaaatcacttaaaattagaaaatagttttgtcaatttcactga 119  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367025 attaccaacctatatcccacttactttttaccaaaaaaaacccactcaacacaattttaaatcacttaaaattagaaaatagttttgtcaatttcactga 4367124  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 4367183 - 4367242
Alignment:
Q  174 ggtctctcataaaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||    
T  4367183 ggtccctcataaaattttcttcgacttttagta-cccaaaaattttctatcttcacctttg 4367242  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 13648967 - 13648918
Alignment:
Q  184 aaaattttcttcgacttttagtaccccaaaagtttttcatcttcaccttt 233  Q
    |||| ||||||| ||||||||| |||||||| | ||||||||||||||||    
T  13648967 aaaaatttcttcaacttttagtcccccaaaaatatttcatcttcaccttt 13648918  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 17290369 - 17290414
Alignment:
Q  184 aaaattttcttcgacttttagtaccccaaaagtttttcatcttcac 229  Q
    |||| ||||||||||||||||| | | |||||||||||||||||||    
T  17290369 aaaaatttcttcgacttttagttctcaaaaagtttttcatcttcac 17290414  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 10685952 - 10685992
Alignment:
Q  188 ttttcttcgacttttagtaccccaaaagtttttcatcttca 228  Q
    |||||||| ||||||||| | ||||||||||||||||||||    
T  10685952 ttttcttcaacttttagtgctccaaaagtttttcatcttca 10685992  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 39176724 - 39176770
Alignment:
Q  188 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  39176724 ttttcttcgacttttagtcccccaaaagtttttcatcttcacttttg 39176770  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 51842509 - 51842475
Alignment:
Q  190 ttcttcgacttttagtaccccaaaagtttttcatc 224  Q
    |||||| ||||||||||||||||||||||||||||    
T  51842509 ttcttccacttttagtaccccaaaagtttttcatc 51842475  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 49492118 - 49492069
Alignment:
Q  185 aaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||||||||| |||||||||| | |||||||||||| |||||||| ||||    
T  49492118 aaattttctttgacttttagtcctccaaaagttttttatcttcacttttg 49492069  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 26423859 - 26423813
Alignment:
Q  188 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  26423859 ttttcttcgacttttagtactccaaaagttttccatcttcacttttg 26423813  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 32026092 - 32026137
Alignment:
Q  183 taaaattttcttcgacttttagtaccccaaaagtttttcatcttca 228  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  32026092 taaaaatttcttcgacttttagttccctaaaagtttttcatcttca 32026137  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 32034616 - 32034661
Alignment:
Q  183 taaaattttcttcgacttttagtaccccaaaagtttttcatcttca 228  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  32034616 taaaaatttcttcgacttttagttccctaaaagtttttcatcttca 32034661  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 16371601 - 16371642
Alignment:
Q  183 taaaattttcttcgacttttagtaccccaaaagtttttcatc 224  Q
    |||||||||||| ||| |||||| ||||||||||||||||||    
T  16371601 taaaattttctttgacgtttagttccccaaaagtttttcatc 16371642  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 27979649 - 27979698
Alignment:
Q  185 aaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||||||||||||||||| || | ||||||||||||||||||||| ||||    
T  27979649 aaattttcttcgacttttcgtcctccaaaagtttttcatcttcacttttg 27979698  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 37255901 - 37255847
Alignment:
Q  183 taaaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttgctt 237  Q
    ||||||||||||| | ||||||| || ||||||||||||||| |||| |||||||    
T  37255901 taaaattttcttctatttttagttcctcaaaagtttttcatcatcacttttgctt 37255847  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 12591213 - 12591258
Alignment:
Q  189 tttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    ||||||| ||||||||| || |||||||||||||||||||| ||||    
T  12591213 tttcttcaacttttagtccctcaaaagtttttcatcttcacttttg 12591258  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 36669730 - 36669678
Alignment:
Q  183 taaaattttc-ttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||| ||||    
T  36669730 taaaattttccttcaacttttagtcccccaaaaatttttcatcttcacttttg 36669678  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 46959090 - 46959130
Alignment:
Q  184 aaaattttcttcgacttttagtaccccaaaagtttttcatc 224  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  46959090 aaaaatttcttcaacttttagtacaccaaaagtttttcatc 46959130  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 20205526 - 20205572
Alignment:
Q  188 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||||||| ||||||||| | |||||||||||||| |||||||||||    
T  20205526 ttttcttcaacttttagtcctccaaaagtttttcaccttcacctttg 20205572  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 8646802 - 8646846
Alignment:
Q  184 aaaattttcttcgacttttagtaccccaaaagtttttcatcttca 228  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||    
T  8646802 aaaaatttcttcgacttttagtcccccaaaggttttccatcttca 8646846  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 29823857 - 29823811
Alignment:
Q  188 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    |||| ||| ||||||||| ||||||||||||||||||||||| ||||    
T  29823857 tttttttcaacttttagtcccccaaaagtttttcatcttcacttttg 29823811  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 28943548 - 28943503
Alignment:
Q  189 tttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 234  Q
    ||||||| ||||||||| |||| |||||||||||||||||| ||||    
T  28943548 tttcttcaacttttagtccccctaaagtttttcatcttcacttttg 28943503  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 33417932 - 33417887
Alignment:
Q  184 aaaattttcttcgacttttagtaccccaaaagtttttcatcttcac 229  Q
    |||| ||||||| ||||||||| | |||||||||||||||||||||    
T  33417932 aaaaatttcttcaacttttagtcctccaaaagtttttcatcttcac 33417887  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 3336389 - 3336425
Alignment:
Q  190 ttcttcgacttttagtaccccaaaagtttttcatctt 226  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  3336389 ttcttcaacttttagtcccccaaaagtttttcatctt 3336425  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 11745132 - 11745164
Alignment:
Q  197 acttttagtaccccaaaagtttttcatcttcac 229  Q
    ||||||||| |||||||||||||||||||||||    
T  11745132 acttttagtcccccaaaagtttttcatcttcac 11745164  T

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