View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_high_12 (Length: 244)
Name: NF21016_high_12
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 53127876 - 53127655
Alignment:
| Q |
18 |
acaactcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaa |
117 |
Q |
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| T |
53127876 |
acaactcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgttgcatcctgaagttcgagaaatattcaaaactagatgtaaaa |
53127777 |
T |
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| Q |
118 |
tcgttaaatacattcggaagtaccttgatgaccgtgatttcttggaggtttgttctctgtccaagtattttgacaccatctgcttataatttctttcctt |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53127776 |
tcgttaaatacattcggaaataccttgatgaccgtgatttcttggaggtttgttctctgtccaagtattctgacaccatctgcttataatttctttcctt |
53127677 |
T |
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| Q |
218 |
ccatttaccttttcttctcact |
239 |
Q |
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|||||||||||||||| ||||| |
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| T |
53127676 |
ccatttaccttttcttttcact |
53127655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 53110018 - 53109825
Alignment:
| Q |
32 |
tttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacatt |
131 |
Q |
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| T |
53110018 |
tttataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatc |
53109919 |
T |
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| Q |
132 |
cggaagtaccttgatgaccgtgatttcttggaggtttgttctctgtccaagtattttgacaccatctgcttataatttctttccttccatttacct |
227 |
Q |
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| T |
53109918 |
cgaagattccttgatggccttgatttcatggaggtttgt--tctgtccaaatattctgatgccagttgcttataatatcttccattccctttacct |
53109825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 53115445 - 53115288
Alignment:
| Q |
29 |
tcttttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatac |
128 |
Q |
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|||| |||||||||||||| |||||| ||||| ||||||||||| ||| || |||| |||||||||||||| | |||||| || |||| || ||| |
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| T |
53115445 |
tcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatattcgagaaatattccacactagaaatagaatcatttcttac |
53115346 |
T |
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| Q |
129 |
attcggaagtaccttgatgaccgtgatttcttggaggtttgttctctgtccaagtatt |
186 |
Q |
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| T |
53115345 |
atccagaggcaccttgatgaccttgattttatggaggtttgttctctgtccaagtatt |
53115288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 53127954 - 53127921
Alignment:
| Q |
50 |
tcgttcacgccatttggatttgatgttgcatcca |
83 |
Q |
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| T |
53127954 |
tcgttcatgccatttggatttgatgttgcatcca |
53127921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 15839134 - 15839220
Alignment:
| Q |
33 |
ttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatc |
119 |
Q |
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||||||||||| |||||||| | ||||||||||||||||||| | || |||| |||||||||||||||| ||||| | ||||||| |
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| T |
15839134 |
ttataggaaactagatatcggttacgccatttggatttgatgcttaatacagaggttcgagaaatattcaggactaggtctaaaatc |
15839220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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