View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_high_2 (Length: 451)
Name: NF21016_high_2
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 8899086 - 8898661
Alignment:
| Q |
18 |
ctattcacacttttctctctatgcttggcttagtaacatttgaagacatacttacaatgcatcttcaaagtcacttagcttagggacaaatttatttcta |
117 |
Q |
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| T |
8899086 |
ctattcatacttttctctctatgcttggcttagtaacatttgaagacatacttacaatgcatcttcaaagtcacttagcttagggacaaatttatttcta |
8898987 |
T |
|
| Q |
118 |
cataaggttgtcttcattaaatttcagttagaaactacaagtttttccaattcgtgtgcagagcacatgtgcaatgccattttcggatgctaagaatcta |
217 |
Q |
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| T |
8898986 |
cataaagttgtcttaattaaatttcagttagaaactacaagtttttccaattcgtgtgcagagcacatgtgcaatgccattttctgatgctaagaatcta |
8898887 |
T |
|
| Q |
218 |
tacatggataatatgcaaaagccctgtcagatgaagagttctgtgaaactacgcaacattgatgtgttgaagcatgcagagtctaacaaaattgaaagag |
317 |
Q |
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| T |
8898886 |
tacatggataatatgcaaaagccctgtcagatgaagagttctgtgaaattacgcaacattgatgtgttgaagcatgcagagtctaacaaaattgaaagag |
8898787 |
T |
|
| Q |
318 |
gatcaactaagcataatgatgaaacaggaggtattgaaatttcactcattttcttcttgggttagaattatttgttaaaaacttaaaattaattaataac |
417 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8898786 |
gatcaactaagcaaaatgatgaaacaggaggtattgaaatttcactcattttcttctttggttagaatta-ttgttaaaaacttaaaattaattaataac |
8898688 |
T |
|
| Q |
418 |
tttttaaaattacaattgtttcatctc |
444 |
Q |
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| T |
8898687 |
tttttaaaattacaattgtttcatctc |
8898661 |
T |
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