View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_high_3 (Length: 439)
Name: NF21016_high_3
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 42089520 - 42089104
Alignment:
| Q |
1 |
aaagatgaagtcttcatgtgcataattcataaccaacaggtttattatgaccacgtgaatgcacaaaatgtattttattaatcttcaaagctaattttcc |
100 |
Q |
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| T |
42089520 |
aaagatgaagtcttcatgtgcataattcataaccaacaggtttattatgatcacgtgaatgcacaaaatgtattttattaatcttcaaagctaattttcc |
42089421 |
T |
|
| Q |
101 |
aaactcatcatatatatttaattattatgctccaactgaaatcttcccaatgtgtgccgtgccgtctcagttatgtttctttgagatcactcacccacgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42089420 |
aaactcatcatatatatttaattattatgctccaactgaaatcttcccaatgtgtgccgtgccgtcccagttatgtttctttgagatcactcacccacgc |
42089321 |
T |
|
| Q |
201 |
attatagaataatataattatttcttgttccctttcatgtatctttacattaacgaaataaccaaatcatgataatcactaaattaaatttgaatgccct |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42089320 |
attatagaataatataatgatttcttgttccctttcatgtatctttacattaacgaaataaccaaatcatgataatcactaaattaaatttgaatgccct |
42089221 |
T |
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| Q |
301 |
gaaaacatgaaaatgcatatagtactatttactttctgtacaatatctcatgcaatagatagtggtatgtatcatactacacaaaagtactatggtcaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42089220 |
gaaaacatgaaaatgcatatagtactatttactttctgtataatatctcatgca----atagtggtatgcatcatactacacaaaagtactatggtcaat |
42089125 |
T |
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| Q |
401 |
tctggtccctggtaattcatta |
422 |
Q |
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|||||| ||||||||||||||| |
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| T |
42089124 |
tctggt-cctggtaattcatta |
42089104 |
T |
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