View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_low_11 (Length: 250)
Name: NF21016_low_11
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1250651 - 1250893
Alignment:
| Q |
1 |
tgatttcacatatgttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1250651 |
tgatttcacatatgttcaaatccttgatatccttctatgttaatattagatcatgtgtgattcaagacatttaagaactgttattgactttggctcctaa |
1250750 |
T |
|
| Q |
101 |
atgtgtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgagga-ggtacgtacgtttc |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
1250751 |
atgtgtgcaatggcgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacattgaggatcgtacgtacatttc |
1250850 |
T |
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| Q |
200 |
tacacattttgttcttatgttttcacttgataacacctatgct |
242 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
1250851 |
tacacattttgttcttatgttttcacttggtaacatctatgct |
1250893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8269411 - 8269587
Alignment:
| Q |
1 |
tgatttcacatatgttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaa |
100 |
Q |
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||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| || |
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| T |
8269411 |
tgatttcccatatgttcaaatccttgacttccttctattttaatat-agatcatgtgggattcaagacatttaggaactgttattgactttggctcccaa |
8269509 |
T |
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| Q |
101 |
atgtgtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaaca |
178 |
Q |
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| T |
8269510 |
atgcatgcaatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaaaca |
8269587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 8287812 - 8287898
Alignment:
| Q |
105 |
gtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgaggaggtacg |
191 |
Q |
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| T |
8287812 |
gtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtacg |
8287898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 8275035 - 8275072
Alignment:
| Q |
191 |
gtacgtttctacacattttgttcttatgttttcacttg |
228 |
Q |
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| T |
8275035 |
gtacatttctacacattttgttcttctgttttcacttg |
8275072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 26585307 - 26585364
Alignment:
| Q |
120 |
aagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaac |
177 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaaac |
26585364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 20507413 - 20507332
Alignment:
| Q |
15 |
ttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcc |
97 |
Q |
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|||||||||||||||||||||||| | |||| ||| ||| ||| ||||||||| ||||| |||||| | |||||||||||||| |
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| T |
20507413 |
ttcaaatccttgatatccttctatatgaata-taggtcaggtgggattcaagacatttaggaactgatgttgactttggctcc |
20507332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 17231896 - 17231932
Alignment:
| Q |
191 |
gtacgtttctacacattttgttcttatgttttcactt |
227 |
Q |
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|||| |||||||||||||||||||| ||||||||||| |
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| T |
17231896 |
gtacatttctacacattttgttcttctgttttcactt |
17231932 |
T |
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