View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21016_low_12 (Length: 249)

Name: NF21016_low_12
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21016_low_12
NF21016_low_12
[»] chr4 (13 HSPs)
chr4 (2-243)||(30101427-30101668)
chr4 (2-243)||(30100282-30100523)
chr4 (2-212)||(48367546-48367762)
chr4 (7-212)||(56331869-56332077)
chr4 (7-120)||(13417824-13417941)
chr4 (130-210)||(52038773-52038851)
chr4 (42-86)||(42819464-42819508)
chr4 (211-243)||(48367436-48367468)
chr4 (16-63)||(50580308-50580356)
chr4 (211-243)||(56331739-56331771)
chr4 (50-94)||(26855851-26855895)
chr4 (211-243)||(52038891-52038923)
chr4 (211-243)||(56331759-56331791)
[»] chr7 (6 HSPs)
chr7 (2-243)||(15743356-15743597)
chr7 (2-212)||(15742235-15742451)
chr7 (13-211)||(29418240-29418447)
chr7 (46-90)||(40692137-40692181)
chr7 (46-93)||(12018555-12018602)
chr7 (19-73)||(41495865-41495917)
[»] chr1 (13 HSPs)
chr1 (2-243)||(28876615-28876856)
chr1 (2-237)||(51837627-51837862)
chr1 (2-212)||(51836467-51836683)
chr1 (2-212)||(28875494-28875710)
chr1 (2-210)||(37810918-37811126)
chr1 (13-210)||(44031535-44031720)
chr1 (7-210)||(19620327-19620530)
chr1 (14-94)||(44872918-44872995)
chr1 (19-90)||(21899525-21899594)
chr1 (211-243)||(28875384-28875416)
chr1 (211-243)||(44031780-44031812)
chr1 (39-90)||(41642217-41642268)
chr1 (211-243)||(44031760-44031792)
[»] chr5 (9 HSPs)
chr5 (2-243)||(14672365-14672612)
chr5 (2-210)||(41422346-41422556)
chr5 (80-210)||(41423212-41423344)
chr5 (69-132)||(41423125-41423188)
chr5 (19-77)||(41574205-41574261)
chr5 (211-243)||(41422274-41422306)
chr5 (46-112)||(27439060-27439124)
chr5 (24-69)||(43543992-43544036)
chr5 (19-94)||(15480881-15480954)
[»] chr3 (11 HSPs)
chr3 (2-210)||(30575748-30575958)
chr3 (2-212)||(6528950-6529161)
chr3 (2-212)||(6530039-6530249)
chr3 (15-210)||(30574600-30574796)
chr3 (7-113)||(43679016-43679120)
chr3 (46-94)||(19316656-19316704)
chr3 (46-93)||(44211461-44211508)
chr3 (46-94)||(19319373-19319419)
chr3 (211-243)||(30575998-30576030)
chr3 (42-94)||(41513457-41513509)
chr3 (19-74)||(14414428-14414482)
[»] chr6 (5 HSPs)
chr6 (2-212)||(1572714-1572930)
chr6 (2-212)||(1573925-1574141)
chr6 (2-212)||(29657342-29657555)
chr6 (27-210)||(11381509-11381691)
chr6 (39-90)||(30575034-30575085)
[»] chr2 (9 HSPs)
chr2 (2-210)||(44112904-44113110)
chr2 (36-210)||(4518863-4519038)
chr2 (105-212)||(44112762-44112870)
chr2 (45-87)||(44503204-44503246)
chr2 (50-94)||(4250978-4251022)
chr2 (39-90)||(3029966-3030017)
chr2 (39-90)||(19019667-19019718)
chr2 (10-56)||(25073862-25073907)
chr2 (211-243)||(44113150-44113182)
[»] chr8 (5 HSPs)
chr8 (7-162)||(13047708-13047866)
chr8 (7-111)||(13046395-13046500)
chr8 (19-90)||(30955157-30955226)
chr8 (19-90)||(30957810-30957879)
chr8 (49-90)||(36824590-36824631)
[»] scaffold0710 (1 HSPs)
scaffold0710 (2-50)||(2797-2845)
[»] scaffold0242 (4 HSPs)
scaffold0242 (46-94)||(7057-7105)
scaffold0242 (46-94)||(9361-9409)
scaffold0242 (46-90)||(11667-11711)
scaffold0242 (46-90)||(20502-20546)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 30101668 - 30101427
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30101668 ataggttgaatagaaaatattacagaagattatccctctctaatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaata 30101569  T
Q  102 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30101568 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgcctgtaaccgctcctaatc 30101469  T
Q  202 aatacaaattatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30101468 aatacaaattatatattaaaataactgactatatattaaaat 30101427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 30100523 - 30100282
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30100523 atagattgaatagaaaatattatcgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaata 30100424  T
Q  102 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  30100423 agtttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatatatacaaagaaagggcataaactgcctgtaaccgctcctaatc 30100324  T
Q  202 aatacaaattatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30100323 aatacaaattatatattaaaataactgactatatattaaaat 30100282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 48367762 - 48367546
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactct----ctctgcccaaaacc 97  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  48367762 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctctctgcccaaaacc 48367663  T
Q  98 aataaggttcctaattaaataattatgaattcc---cctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgct 194  Q
    |||||||||||||||| ||||||| |||| |||   ||||||||||||| |||||||| |||||||||| ||  ||| |||||||||||| |||||||||    
T  48367662 aataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatac-aactaagagcataaactgcctgtaaccgct 48367564  T
Q  195 cctaatcaatacaaatta 212  Q
    ||||||||||||||||||    
T  48367563 cctaatcaatacaaatta 48367546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 56332077 - 56331869
Alignment:
Q  7 ttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca--tcactctctctgcccaaaaccaataagg 104  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||    
T  56332077 ttgaaaagaaaatattacagaagattatccctctgtaatcctagagcaaaagctcctcagagaagagacatttctctctctctgcccaaaaccaataagg 56331978  T
Q  105 ttcctaattaaataattatgaatt-cccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaa 203  Q
    || |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||| ||| | |||| || ||||||||||||||||||    
T  56331977 tttctaatttaataattctgaattccccctactgttgtggccaaatggcattatttatacaaacaaatggcttgaacttcctgtaaccgctcctaatcaa 56331878  T
Q  204 tacaaatta 212  Q
    |||||||||    
T  56331877 tacaaatta 56331869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 13417941 - 13417824
Alignment:
Q  7 ttgaatagaaaatattacagaagattatc----cctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataa 102  Q
    ||||| ||||||||||||||||||||||     |||||  ||||||||||||| |||||| ||||||||| ||||  |||||||||||||||||||||||    
T  13417941 ttgaaaagaaaatattacagaagattatttattcctcttcaatcccagagcaagagctccacagagaagatacatttctctctctgcccaaaaccaataa 13417842  T
Q  103 ggttcctaattaaataat 120  Q
    ||||||||| | ||||||    
T  13417841 ggttcctaactgaataat 13417824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 52038773 - 52038851
Alignment:
Q  130 ccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaatacaaat 210  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||  |||| |||||||||||| ||||||    
T  52038773 ccctactgttgtggccaaatggtcttatttatacaaactaagggcataaactgcc--taactgctcctaatcaacacaaat 52038851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 42819508 - 42819464
Alignment:
Q  42 taatcccagagcaaaagctcctcagagaagagacatcactctctc 86  Q
    |||||||||||||| |||||||||||||||||||||  |||||||    
T  42819508 taatcccagagcaagagctcctcagagaagagacatttctctctc 42819464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 48367468 - 48367436
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||||||||    
T  48367468 tatatattaaaataactgactatatattaaaat 48367436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 50580356 - 50580308
Alignment:
Q  16 aaatattacagaagattatccc-tctgtaatcccagagcaaaagctcct 63  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  50580356 aaatattacagaagattaacccctctgtaatcccagagcaaatgctcct 50580308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 56331771 - 56331739
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||||||||    
T  56331771 tatatattaaaataactgactatatattaaaat 56331739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 26855851 - 26855895
Alignment:
Q  50 gagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    |||||||||||||||||||||||||| |  || ||||||||||||    
T  26855851 gagcaaaagctcctcagagaagagacgtttctatctctgcccaaa 26855895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 52038891 - 52038923
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||| ||||    
T  52038891 tatatattaaaataactgactatatatttaaat 52038923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 56331791 - 56331759
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||| |||||||||||||||    
T  56331791 tatatattaaaataactaactatatattaaaat 56331759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 15743597 - 15743356
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15743597 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaata 15743498  T
Q  102 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15743497 agtttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgcctgtaaccgctcctaatc 15743398  T
Q  202 aatacaaattatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15743397 aatacaaattatatattaaaataactgactatatattaaaat 15743356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 15742451 - 15742235
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactct----ctctgcccaaaacc 97  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  15742451 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctctctgcccaaaacc 15742352  T
Q  98 aataaggttcctaattaaataattatgaattcc---cctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgct 194  Q
    |||||||||||||||| ||||||| |||| |||   ||||||||||||| |||||||| |||||||||| ||  ||| |||||||||||| |||||||||    
T  15742351 aataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatac-aactaagagcataaactgcctgtaaccgct 15742253  T
Q  195 cctaatcaatacaaatta 212  Q
    ||||||||||||||||||    
T  15742252 cctaatcaatacaaatta 15742235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 29418240 - 29418447
Alignment:
Q  13 agaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat----------cactctctctgcccaaaaccaataa 102  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||          | |||||||||||||||||||||||    
T  29418240 agaaaatattacagaagatt--ccctctgtaatcctagagcaaaagctcctcagagaagagacatttctctctctctctctctctgcccaaaaccaataa 29418337  T
Q  103 ggttcctaattaaataattatgaattc-ccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  29418338 ggttcctaattgaataattctgaattctccctactgttgtggccaaatggccttatttatacaaacaaagggcataaactgcctgtaactgctcctaatc 29418437  T
Q  202 aatacaaatt 211  Q
    ||||||||||    
T  29418438 aatacaaatt 29418447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 40692181 - 40692137
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  40692181 cccagagcaaaagctcctcagagaagagacatttctctctctgcc 40692137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 12018555 - 12018602
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaa 93  Q
    |||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  12018555 cccagagcaaaagctcctcagataagagatatttctctctctgcccaa 12018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 41495917 - 41495865
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagag 73  Q
    ||||||||||||| | ||||  |||| ||||||||||||||||||||||||||||    
T  41495917 tattacagaagataacccct--gtaaccccagagcaaaagctcctcagagaagag 41495865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 28876856 - 28876615
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28876856 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaata 28876757  T
Q  102 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28876756 agtttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgcctgtaaccgctcctaatc 28876657  T
Q  202 aatacaaattatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28876656 aatacaaattatatattaaaataactgactatatattaaaat 28876615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 51837862 - 51837627
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51837862 atagattgaatagaaaatattactgaagattatccctctgtaattccagagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaata 51837763  T
Q  102 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
    |||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51837762 aggttattaattaaataattatgaattcccccactgttgtggccaaatggccttatttatacaaagaaagggcataaactgcctgtaaccgctcctaatc 51837663  T
Q  202 aatacaaattatatattaaaataactgactatatat 237  Q
    ||||||||||||||||||||||||||||||||||||    
T  51837662 aatacaaattatatattaaaataactgactatatat 51837627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 51836683 - 51836467
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactct----ctctgcccaaaacc 97  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  51836683 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctctctgcccaaaacc 51836584  T
Q  98 aataaggttcctaattaaataattatgaattcc---cctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgct 194  Q
    |||||||||||||||| ||||||| |||| |||   ||||||||||||| |||||||| |||||||||| ||  ||| |||||||||||| |||||||||    
T  51836583 aataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatac-aactaagagcataaactgcctgtaaccgct 51836485  T
Q  195 cctaatcaatacaaatta 212  Q
    ||||||||||||||||||    
T  51836484 cctaatcaatacaaatta 51836467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 28875710 - 28875494
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatca----ctctctctgcccaaaacc 97  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  28875710 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcaatctctctctctgcccaaaacc 28875611  T
Q  98 aataaggttcctaattaaataattatgaattcc---cctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgct 194  Q
    |||||||||||||||| ||||||| |||| |||   ||||||||||||| |||||||| |||||||||| ||  ||| |||||||||||| |||||||||    
T  28875610 aataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatac-aactaagagcataaactgcctgtaaccgct 28875512  T
Q  195 cctaatcaatacaaatta 212  Q
    ||||||||||||| ||||    
T  28875511 cctaatcaatacagatta 28875494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 37811126 - 37810918
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  37811126 atagattgaaaagaaaatattacagaagattacccctctgtaatcccagagcaaaagctcctcagagaagagacatttctgtctctgcccaaaaccaata 37811027  T
Q  102 aggttcctaattaaataattatgaattc--ccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaa 199  Q
    ||||| |||||| ||||||| |||| ||  |||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||  |||| ||||||||    
T  37811026 aggtttctaattgaataattctgaaatcctccctaccgttgtggccaaatggtcttatttatacaaactaagggcataaactgcc--taactgctcctaa 37810929  T
Q  200 tcaatacaaat 210  Q
    |||| ||||||    
T  37810928 tcaacacaaat 37810918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 44031535 - 44031720
Alignment:
Q  13 agaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataaggttcctaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  44031535 agaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctctctctgcccaaaaccaataaggttcctaat 44031634  T
Q  113 taaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaatacaaat 210  Q
    | |||||||          || ||||||||||||||||| ||||||||||||||  ||||||||||||||||  |||| |||||||||||| ||||||    
T  44031635 tgaataatt----------ctgctgttgtggccaaatggtcttatttatacaaactaagggcataaactgcc--taactgctcctaatcaacacaaat 44031720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 19620327 - 19620530
Alignment:
Q  7 ttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataaggtt 106  Q
    ||||| |||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  19620327 ttgaaaagaaaatattacagaagattatgcctctataattccagagcaagagctcctcagagaagagacatttctctctctgcccaaaaccaatatggtt 19620426  T
Q  107 cctaattaaataattatgaat--tcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaat 204  Q
    || || ||||||| |||||||  | |||||| |||||||||||||| | ||||||||| | ||  ||| |||||||||||  |||| ||||||||| |||    
T  19620427 ccaaactaaataaatatgaatccttccctacagttgtggccaaatgacgttatttata-atag-caggacataaactgcctataactgctcctaataaat 19620524  T
Q  205 acaaat 210  Q
    ||||||    
T  19620525 acaaat 19620530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 44872918 - 44872995
Alignment:
Q  14 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||   ||||||||||||||    
T  44872918 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 44872995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 21899594 - 21899525
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    ||||||||||||| |||  ||||||| || |||||||||||||||||||||||||||||  |||||||||||    
T  21899594 tattacagaagataatc--tctgtaaccctagagcaaaagctcctcagagaagagacatttctctctctgcc 21899525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 28875416 - 28875384
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||||||||    
T  28875416 tatatattaaaataactgactatatattaaaat 28875384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 44031780 - 44031812
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||||||||    
T  44031780 tatatattaaaataactgactatatattaaaat 44031812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 41642268 - 41642217
Alignment:
Q  39 ctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    |||||| || |||||| ||||||||||||||||||||||  |||||||||||    
T  41642268 ctgtaaccctagagcagaagctcctcagagaagagacatttctctctctgcc 41642217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 44031760 - 44031792
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||| |||||||||||||||    
T  44031760 tatatattaaaataactaactatatattaaaat 44031792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 14672612 - 14672365
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctct------gcccaaaa 95  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||      ||||||||    
T  14672612 atagattgaatagaaaatattaccgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctctctctctctctgcccaaaa 14672513  T
Q  96 ccaataaggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctc 195  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14672512 ccaataagtttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgcctgtaaccgctc 14672413  T
Q  196 ctaatcaatacaaattatatattaaaataactgactatatattaaaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14672412 ctaatcaatacaaattatatattaaaataactgactatatattaaaat 14672365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 41422556 - 41422346
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  41422556 atagattgaatagaaaatattaccgaagattatccctctataatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaaca 41422457  T
Q  102 aggttcctaattaaataattatgaattcccct--actgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaa 199  Q
    |||||||||||||||||||| |||| ||| ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  41422456 aggttcctaattaaataattctgaaatcctctccactgttgtggccaaatggccttatttatacaaacaaagggcataaactgcctgtaaccgctcctaa 41422357  T
Q  200 tcaatacaaat 210  Q
    |||| ||||||    
T  41422356 tcaacacaaat 41422346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 41423212 - 41423344
Alignment:
Q  80 ctctctctgcccaaaaccaataaggttcctaattaaataattatgaattcccct--actgttgtggccaaatggccttatttatacaaagaaagggcata 177  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||  |||||| |||||||||||||||||||||||||| ||||||||||    
T  41423212 ctctctctgcccaaaaccaataaggttcctaattaaataattctgaaatcctctccactgttctggccaaatggccttatttatacaaacaaagggcata 41423311  T
Q  178 aactgccagtaaccgctcctaatcaatacaaat 210  Q
    ||||||| |||||||||||||||||| ||||||    
T  41423312 aactgcctgtaaccgctcctaatcaacacaaat 41423344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 41423188 - 41423125
Alignment:
Q  69 aagagacatcactctctctgcccaaaaccaataaggttcctaattaaataattatgaattcccc 132  Q
    |||||||||  |||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  41423188 aagagacatttctctctctgcccaaaaccaacaaggttcctaattgaattattttgaattcccc 41423125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 41574205 - 41574261
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 77  Q
    ||||||||||||| | ||||  |||| ||||||||||||||||||||||||||||||||    
T  41574205 tattacagaagataacccct--gtaaccccagagcaaaagctcctcagagaagagacat 41574261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 41422306 - 41422274
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||||||||    
T  41422306 tatatattaaaataactgactatatattaaaat 41422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 27439060 - 27439124
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataaggttcctaat 112  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||| |||  | ||||||||||||||    
T  27439060 cccagagcataagctcctcagagaagagatatttctctctctgcctaaa--ccataaggttcctaat 27439124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 43543992 - 43544036
Alignment:
Q  24 cagaagattatccctctgtaatcccagagcaaaagctcctcagaga 69  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||    
T  43543992 cagaagattaaccc-ctataatcccagagcaaaagctcctcagaga 43544036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 15480881 - 15480954
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    ||||||||||||| | ||||  |||| ||| |||||||| ||||||| |||||||||||  ||||||| |||||||    
T  15480881 tattacagaagataacccct--gtaacccctgagcaaaaactcctcatagaagagacattcctctctcggcccaaa 15480954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 30575748 - 30575958
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  30575748 atagattgaatagaaaatattacagaagagtatccctttgtaatcccaaagcaaaagctcctcagagaagagacatttctctctctgcccaaaaccaata 30575847  T
Q  102 aggttcctaattaaataattatgaattcccct--actgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaa 199  Q
    |||||||||||| ||||||| |||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30575848 aggttcctaattgaataattctgaaatcctctccactgttgtggccaaatggccttatttatacaaagaaagggcataaactgcctgtaaccgctcctaa 30575947  T
Q  200 tcaatacaaat 210  Q
    |||| ||||||    
T  30575948 tcaacacaaat 30575958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 6528950 - 6529161
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||||||||||||||    
T  6528950 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcaaagaagagacatttctctttctgcccaaaaccaata 6529049  T
Q  102 aggttcctaattaaataattatgaattc--ccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaa 199  Q
    |||||||||||| ||||||| |||||||  |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||  |||||||||||||    
T  6529050 aggttcctaattgaataattctgaattcctccctactgttgtggtcaaatggccttatttatac-aactaagggcataaactgcctataaccgctcctaa 6529148  T
Q  200 tcaatacaaatta 212  Q
    |||||||||||||    
T  6529149 tcaatacaaatta 6529161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 6530039 - 6530249
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  6530039 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctctttctgcccaaaaccaata 6530138  T
Q  102 aggttcctaattaaataattatgaattc--ccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaa 199  Q
    |||||||||||| ||||||| |||||||  |||||||||||||| ||||||||| ||||||||| ||  ||||||||||||||||  |||||||||||||    
T  6530139 aggttcctaattgaataattctgaattcctccctactgttgtggtcaaatggcc-tatttatac-aactaagggcataaactgcctataaccgctcctaa 6530236  T
Q  200 tcaatacaaatta 212  Q
    |||||||||||||    
T  6530237 tcaatacaaatta 6530249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 30574600 - 30574796
Alignment:
Q  15 aaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataaggttcctaatta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||     
T  30574600 aaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctctctctgcccaaaaccaataaggttcctaattg 30574699  T
Q  115 aataattatgaattc-ccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaatacaaat 210  Q
    ||||||| | ||| | | | || |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||    
T  30574700 aataattctcaatcctctccaccgttgtggccaaatggccttatttatacaaacaaagggcataaactgcctgtaatcgctcctaatcaacacaaat 30574796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 43679120 - 43679016
Alignment:
Q  7 ttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataaggtt 106  Q
    ||||| ||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  43679120 ttgaaaagaaaatattacagaagatt--ccctctgtaatcctagagcaaacgctcctcagagaagagacatttctctctctgcccaaaaccaataaggtt 43679023  T
Q  107 cctaatt 113  Q
     ||||||    
T  43679022 tctaatt 43679016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 19316704 - 19316656
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  19316704 cccagagcaaaagctcctcagagaagagacatttctctctctgcccaaa 19316656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 44211508 - 44211461
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaa 93  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  44211508 cccagagcaaaagctcctcagagaagagacatttctctctctgcccaa 44211461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 19319419 - 19319373
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  19319419 cccagagcaaaagctcctcagagaagagacat--ttctctctgcccaaa 19319373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 30575998 - 30576030
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||||||||||||||||||||||||||||||    
T  30575998 tatatattaaaataactgactatatattaaaat 30576030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41513457 - 41513509
Alignment:
Q  42 taatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    |||||||||||||| ||||||| |||||||| ||||  |||||||||||||||    
T  41513457 taatcccagagcaagagctccttagagaagaaacatttctctctctgcccaaa 41513509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 14414428 - 14414482
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagaga 74  Q
    ||||||| ||||||| ||| |||||||||||||||||| ||||||||||| |||||    
T  14414428 tattacataagattaaccc-ctgtaatcccagagcaaatgctcctcagaggagaga 14414482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 1572714 - 1572930
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatca----ctctctctgcccaaaacc 97  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  1572714 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctctctgcccaaaacc 1572813  T
Q  98 aataaggttcctaattaaataattatgaattcc---cctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgct 194  Q
    |||||||||||||||| ||||||| |||| |||   ||||||||||||| |||||||| |||||||||| ||  ||| |||||||||||| |||||||||    
T  1572814 aataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatac-aactaagagcataaactgcctgtaaccgct 1572912  T
Q  195 cctaatcaatacaaatta 212  Q
    ||||||||||||||||||    
T  1572913 cctaatcaatacaaatta 1572930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 1573925 - 1574141
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatca----ctctctctgcccaaaacc 97  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  1573925 atagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctctctgcccaaaacc 1574024  T
Q  98 aataaggttcctaattaaataattatgaattcc---cctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgct 194  Q
    |||||||||||||||| ||||||| |||| |||   ||||||||||||| |||||||| |||||||||| ||  ||| |||||||||||| |||||||||    
T  1574025 aataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatac-aactaagagcataaactgcctgtaaccgct 1574123  T
Q  195 cctaatcaatacaaatta 212  Q
    ||||||||||||||||||    
T  1574124 cctaatcaatacaaatta 1574141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 29657555 - 29657342
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29657555 atagattgaatagaaaatattaccgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctctctctgcccaaaaccaata 29657456  T
Q  102 aggttcctaattaaataattatgaa----ttcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcct 197  Q
    |||||||||||| ||||||| ||||      ||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||  |||||||||||    
T  29657455 aggttcctaattgaataattctgaaaaatcccccctactgttgtggtcaaatggccttatttatac-aactaagggcataaactgcctataaccgctcct 29657357  T
Q  198 aatcaatacaaatta 212  Q
    |||||||||||||||    
T  29657356 aatcaatacaaatta 29657342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 11381691 - 11381509
Alignment:
Q  27 aagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaac-caataaggttcctaattaaataattatga 125  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||  |||||| ||||||||  |||||||||| |||||| ||||||| | |    
T  11381691 aagattaaccctctgtaatcccatagcaaaagctcctcggagaagagacatc--tctctccgcccaaaaagcaataaggtttctaattgaataattctca 11381594  T
Q  126 attcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaatacaaat 210  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  11381593 attcccctcctgttgtggccaaatggtcttatttatacaaacaaagggcataaactgcatgtaaccgctcctaatcaatacaaat 11381509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 30575034 - 30575085
Alignment:
Q  39 ctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  30575034 ctgtaaccccagagcaaaagctcctcagagaagagacatttctctctctgcc 30575085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 44112904 - 44113110
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaata 101  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  44112904 atagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaacagctcctcagagaagagacatttctctctctgcccaaaaccaata 44113003  T
Q  102 aggttcctaattaaataattatgaattcccctactgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatc 201  Q
     ||||||||| | ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||  |||| |||||| |||    
T  44113004 tggttcctaactgaataattctgaattcccctactgttgtagccaaatggtcttatttatacaaactaagggcataaactgcc--taactgctcctgatc 44113101  T
Q  202 aatacaaat 210  Q
    || ||||||    
T  44113102 aacacaaat 44113110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 4519038 - 4518863
Alignment:
Q  36 cctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcccaaaaccaataaggttcctaattaaataattatgaattc-cccta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| | ||| | | |||    
T  4519038 cctctgtaatcccagagcaaaagctcctcagagaagagacatttctctctctgcccaaaaccaataaggttcctaattgaataattctcaatcctctcta 4518939  T
Q  135 ctgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaatacaaat 210  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  4518938 ctgttgtggccaaatggccttatttatacaaacaaagggcataaactgcctgtaaccgctcctaatcaacacaaat 4518863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 44112870 - 44112762
Alignment:
Q  105 ttcctaattaaataattatgaattcccct-actgttgtggccaaatggccttatttatacaaagaaagggcataaactgccagtaaccgctcctaatcaa 203  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  44112870 ttcctaattaaataattatgaattccccccactattgtggccaaatggccttatttatacaaacaaagggcataaactgcctgtaaccgcttctaatcaa 44112771  T
Q  204 tacaaatta 212  Q
    |||||||||    
T  44112770 tacaaatta 44112762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 44503246 - 44503204
Alignment:
Q  45 tcccagagcaaaagctcctcagagaagagacatcactctctct 87  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  44503246 tcccagagcaaaagctcttcagagaagagacatctctctctct 44503204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 4251022 - 4250978
Alignment:
Q  50 gagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    |||||||| |||||||||||||||||||  |||||||||||||||    
T  4251022 gagcaaaaactcctcagagaagagacattcctctctctgcccaaa 4250978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 3029966 - 3030017
Alignment:
Q  39 ctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    |||||| |||| ||||||||||||||||| |||||||||  |||||||||||    
T  3029966 ctgtaaccccatagcaaaagctcctcagataagagacatttctctctctgcc 3030017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 19019667 - 19019718
Alignment:
Q  39 ctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    |||||| |||| ||||||||| |||||||||||||||||  |||||||||||    
T  19019667 ctgtaaccccatagcaaaagcccctcagagaagagacatttctctctctgcc 19019718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 25073862 - 25073907
Alignment:
Q  10 aatagaaaatattacagaagattatccctctgtaatcccagagcaaa 56  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||    
T  25073862 aatagaaaatattacagaagattgaccc-ctgtaatcccagagcaaa 25073907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 44113150 - 44113182
Alignment:
Q  211 tatatattaaaataactgactatatattaaaat 243  Q
    |||||| ||||||||||||||||||||||||||    
T  44113150 tatataataaaataactgactatatattaaaat 44113182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 13047866 - 13047708
Alignment:
Q  7 ttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgccc-aaaaccaataaggt 105  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   || ||||||||| ||||||||||||||    
T  13047866 ttgaaaagaaaatattacagaagattatccctctataatcccagagcaaaggctcctcagagaagagacacttctttctctgcccaaaaaccaataaggt 13047767  T
Q  106 tcctaattaaataattatgaat--tcccctactgttgtggccaaatggccttatttata 162  Q
    |||||| | |||| || |||||  |  ||||| ||||||||||||||||||| ||||||    
T  13047766 tcctaactgaatatttctgaatcctttcctacagttgtggccaaatggccttgtttata 13047708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 13046500 - 13046395
Alignment:
Q  7 ttgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgccc-aaaaccaataaggt 105  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |  || ||||| ||| ||||||||||||||    
T  13046500 ttgaaaagaaaatattacagaagattatccctctgtaattccagagcaaaggctcctcagagaagacacgttcctttctctacccaaaaaccaataaggt 13046401  T
Q  106 tcctaa 111  Q
    ||||||    
T  13046400 tcctaa 13046395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 30955157 - 30955226
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    ||||||||||||| |||  ||||||| || |||||||||||||||||||||||||||||  |||||||||||    
T  30955157 tattacagaagataatc--tctgtaaccctagagcaaaagctcctcagagaagagacatttctctctctgcc 30955226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 30957810 - 30957879
Alignment:
Q  19 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    ||||||||||||| |||  ||||||| || |||||||||||||||||||||||||||||  |||||||||||    
T  30957810 tattacagaagataatc--tctgtaaccctagagcaaaagctcctcagagaagagacatttctctctctgcc 30957879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 36824631 - 36824590
Alignment:
Q  49 agagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  36824631 agagcataagctcctcagagaagagacatttctctctctgcc 36824590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 2797 - 2845
Alignment:
Q  2 ataggttgaatagaaaatattacagaagattatccctctgtaatcccag 50  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  2797 atagattgaatagaaaatattactgaagattatccctctgtaattccag 2845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 7105 - 7057
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  7105 cccagagcaaaagctcctcagagaaaagacatttctctctctgcccaaa 7057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 9409 - 9361
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcccaaa 94  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  9409 cccagagcaaaagctcctcagagaaaagacatttctctctctgcccaaa 9361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 11711 - 11667
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  11711 cccagagcaaaagctcctcagagaagagacatttctctctctgcc 11667  T

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Target: scaffold0242; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 20546 - 20502
Alignment:
Q  46 cccagagcaaaagctcctcagagaagagacatcactctctctgcc 90  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  20546 cccagagcaaaagctcctcagagaagagacatttctctctctgcc 20502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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