View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21016_low_2 (Length: 515)
Name: NF21016_low_2
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 37946688 - 37946999
Alignment:
| Q |
9 |
acgacaacgacgtaggaaccatgtttgagttcaaatcaaacataaaatttcataatggcaacaatatctaatcaaaattgaaaactgatttaaaaag-tt |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| || |
|
|
| T |
37946688 |
acgacgacgacgtaggaaccatgtttgagttcaaatcaaacataaaatttcataatggcaaca-tatctaatcaaaattggaaactgatataaaaaaatt |
37946786 |
T |
|
| Q |
108 |
gaagaatgttcaaaaccaaaatattattgaaattttttaatctcttaatatgaaaatcgctcgtatcgaatttcatattacttttttaaaattgaatcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37946787 |
gaagaatgttcaaaaccaaaatattattgaaattttttaatctcttaatatgaaaattgctcatattgaatttcatattacttttttaaaattgaatcaa |
37946886 |
T |
|
| Q |
208 |
atcaaatcgcataataatttttaaaatagtcttaacaacattcattcacatgtatatttcagcattctctttggacctca-ttttccgaatgatgagaca |
306 |
Q |
| |
|
||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| || | |||||| |||||| ||||| |
|
|
| T |
37946887 |
atcg----gtataataaattttaaagtagtcttaacaacattcattcacatgtatatttcatcgttctctttggagcttatttttccaaatgataagaca |
37946982 |
T |
|
| Q |
307 |
cacgtaaatttcattca |
323 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
37946983 |
cacataaatttcattca |
37946999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 37947002 - 37947080
Alignment:
| Q |
357 |
aaataattaattttattttgtactcctatttacaattcctccgatcaatcaatcatgaatcatgtccattaccacaaatagcaagtaaat |
446 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37947002 |
aaataattaattttattttgtactgctatttacaattcc-----------aatcatgaatcatgtccattaccacaaatagcaagtaaat |
37947080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 500
Target Start/End: Original strand, 37947096 - 37947132
Alignment:
| Q |
464 |
cagccattaatccaaatggcaacaattgagacaaacc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37947096 |
cagccattaatccaaatggcaacaattgagacaaacc |
37947132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 27167861 - 27167816
Alignment:
| Q |
171 |
tatcgaatttcatattacttttttaaaattgaatcaaatcaaatcg |
216 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
27167861 |
tatcggatttcagatcacttttttaaaattgaatcaaaccaaatcg |
27167816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University