View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_low_5 (Length: 415)
Name: NF21016_low_5
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 30395584 - 30395194
Alignment:
| Q |
7 |
ggacatcatcatgtcctagaagcagaacagaaagagatatctcatgcagcaggagcaaagaccttacaggatggttataattggagaaaatatggccaaa |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30395584 |
ggacaacatcatgtcctagaagcagaacagaaagagatatctcatgcagcaggagcaaagaccttacaggatggttataattggagaaaatatggccaaa |
30395485 |
T |
|
| Q |
107 |
aacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcagtctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30395484 |
aacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcagtctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacat |
30395385 |
T |
|
| Q |
207 |
aagagaaattatttacagtggtaatcacaaccatgcaaaaccaaattcaagtcgtcgaggatcagtaccttctagtgatgaaatgtcagaaaatgctgaa |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30395384 |
aagagaaattatttacagtggtaatcataaccatgcaaaaccaaattcaagtcgtcgaggatcagtaccttctagtgatgaaatgtcagaaaatgctgaa |
30395285 |
T |
|
| Q |
307 |
gccaatgaaacacggggaaacattcagccgcgaggaaaagatgcaaaacacaatccggaatggaagccagatggtcaagaaaggacatccc |
397 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30395284 |
gccaatgaaacacggggaaacattcagtcgcgaggaaaagatgcaaaacacaatccggaatggaagcctgatggtcaagaaaggacatccc |
30395194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 30409245 - 30408934
Alignment:
| Q |
7 |
ggacatcatcatgtcctagaagcagaacagaaagagatatctcatgcagcaggagcaaagaccttacaggatggttataattggagaaaatatggccaaa |
106 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
30409245 |
ggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaa |
30409146 |
T |
|
| Q |
107 |
aacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcagtctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacat |
206 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
30409145 |
aacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacat |
30409046 |
T |
|
| Q |
207 |
aagagaaattatttacagtggtaatcacaaccatgcaaaaccaaattcaagtcgtcgaggatcagtaccttctagtgatgaaatgtcagaaaatgctgaa |
306 |
Q |
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|| |||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
30409045 |
aacagaaattatttacaagggtaatcataaccatgcaaaaccacattcaagtcgccgaggatcagtaccttctagtgatgagatatcagaaaatgctgaa |
30408946 |
T |
|
| Q |
307 |
gccaatgaaaca |
318 |
Q |
| |
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|||||||||||| |
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|
| T |
30408945 |
gccaatgaaaca |
30408934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 397
Target Start/End: Complemental strand, 30408905 - 30408828
Alignment:
| Q |
320 |
ggggaaacattcagccgcgaggaaaagatgcaaaacacaatccggaatggaagccagatggtcaagaaaggacatccc |
397 |
Q |
| |
|
|||||||||||||| | | || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
30408905 |
ggggaaacattcagtcatgggggaaagatgcaaaacacaatccggaacggaagcctgatggtcaagaaaggacatccc |
30408828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 26332619 - 26332563
Alignment:
| Q |
76 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccg |
132 |
Q |
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|||||||| ||||||||||||||||| || |||||||| ||||| || ||| ||||| |
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|
| T |
26332619 |
gatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccg |
26332563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 31615428 - 31615355
Alignment:
| Q |
76 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatg |
149 |
Q |
| |
|
||||| || |||||| |||||||||| ||||| ||||| || || |||||| |||||||||| ||||||||||| |
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| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatg |
31615355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 26967128 - 26967067
Alignment:
| Q |
76 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaag |
137 |
Q |
| |
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||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| |
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| T |
26967128 |
gatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaag |
26967067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 2056298 - 2056390
Alignment:
| Q |
74 |
aggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcagtctaattgtc |
166 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| || || || || || || |||| |||||||| |||| ||| || ||||||| |
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| T |
2056298 |
aggatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtc |
2056390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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