View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_low_6 (Length: 403)
Name: NF21016_low_6
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 41261096 - 41260717
Alignment:
| Q |
9 |
agcacagaacgaagcaagcaagttgaagtaaaaacaaccaaagcagcaaacaacgtgggcaagaagaaatcaaagtgggaggtgctaaccaccacatgtt |
108 |
Q |
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| T |
41261096 |
agcacagaacgaagcaagcaagttgaagtaaaaacaaccaaagcagcaaacaacgtgggcaagaagaaatcaaagtgggaggtgctaaccaccacatgtt |
41260997 |
T |
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| Q |
109 |
ccggcaagcaaaccatctccgtcggagaatcaaaaggaatcctcacaaattcatgatgatgacaaggctttgatgattgagatactgcaaacataaaggc |
208 |
Q |
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| T |
41260996 |
ccggcaagcaaaccatctccgtcggagaatcaaaaggaatcctcacaaattcatgatgatgacaaggctttgatgattgagatactgcaaacataaaggc |
41260897 |
T |
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| Q |
209 |
cacaccgggtgccaatgacgccaacaccacggtaacgatcaaaagaatggtccatgtggttgcataaggcagtctggacccgactcgtcggaaacatgaa |
308 |
Q |
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| T |
41260896 |
cacaccgggtgccaacgacgtcaacaccacggtaacgatcaaaagaacggtccatgtggttgcataaggcagtctggacccgactcgtcggaaacatgaa |
41260797 |
T |
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| Q |
309 |
gggaaccaaacaaaactagacatgagtgattaatgaataatgaatgatcattcag-aatggataaacaacaagaacttaa |
387 |
Q |
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| T |
41260796 |
gggaaccaaacaaaactagacatgggtgattaatgaataatgaatgatcattcagaaatggataaataacaagaacttaa |
41260717 |
T |
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