View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_low_7 (Length: 398)
Name: NF21016_low_7
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 19056573 - 19056199
Alignment:
| Q |
10 |
cataggtcgtatgtggttgaacaaattgacaattgtcgtgactatattgtataatatattgatggtgtaaattgattttgtagagttgagttaaatcca- |
108 |
Q |
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| T |
19056573 |
catagatcgtatgtggttgaacaaattgacaattatcgtgactatattgtataaaatattgatggtgtaaattgattttgtagagttgagttaaatccaa |
19056474 |
T |
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| Q |
109 |
-ttcaaaatactctcataataacatatatgttttgttgtttgaattagggaggaagtgggtatgcaaggaagatcacatacgaaaatattaaacttgcag |
207 |
Q |
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| T |
19056473 |
attcaaaatattctcataataacatatatgttttgttgtttgaattagggaggaagtgggtatgcaaggaagatcacatacgaaaatattaaacttgtag |
19056374 |
T |
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| Q |
208 |
aagtcaagaaccctattattattaatcaaaactacaatcctcatatatatgatagttctagcgaagtagtgaaagtgagtgatgttactttcctcaacat |
307 |
Q |
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| T |
19056373 |
aagtcaagaaccctattattattaatcaaaactacaatcctcatatatatgatagttctagcgaagtagtgaaagtgagtgatgttactttcctcaacat |
19056274 |
T |
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| Q |
308 |
acatggaacctccgttaatgagaatacggtccaattaaattgtgaccctaatattgggtgcgacaacattataat |
382 |
Q |
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| T |
19056273 |
acatggaacctccgttaatgagaatacggtccaattaaattgtgaccctaaaattgggtgcgacaacattataat |
19056199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 293
Target Start/End: Complemental strand, 21365835 - 21365702
Alignment:
| Q |
159 |
ggaagtgggtatgcaaggaagatcacatacgaaaatattaaacttgcagaagtcaagaaccctattattattaatcaaaactacaatcctcatatatatg |
258 |
Q |
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| T |
21365835 |
ggaagtgggtatgcaaggaatgtcgcatacgaagatattaaacttggatgagtcaagaaccctctgattgttgatcaatattatgatcgtcat-ggtatg |
21365737 |
T |
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| Q |
259 |
atagttctagcgaagtagtgaaagtgagtgatgtt |
293 |
Q |
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| T |
21365736 |
atagtgctagcaaagtattgaaagtgagtgatgtt |
21365702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 38097572 - 38097637
Alignment:
| Q |
131 |
atatatgttttgttgtttgaattagggaggaagtgggtatgcaaggaagatcacatacgaaaatat |
196 |
Q |
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| T |
38097572 |
atatatgttttgttatttgaattagggaggatctggatatgcgaggaacattacatacgaagatat |
38097637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 21551928 - 21552006
Alignment:
| Q |
143 |
ttgtttgaattagggaggaagtgggtatgcaaggaagatcacatacgaaaatattaaacttgcagaagtcaagaaccct |
221 |
Q |
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| T |
21551928 |
ttgtttgaattagggtggatctggatatgcaaggaacattaaatacgaagatattacacttgttgaagtcgagaaccct |
21552006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 21552048 - 21552092
Alignment:
| Q |
275 |
agtgaaagtgagtgatgttactttcctcaacatacatggaacctc |
319 |
Q |
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| T |
21552048 |
agtggaagtaagtgatgttactttcagcaacatacatggaacctc |
21552092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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