View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21016_low_8 (Length: 358)
Name: NF21016_low_8
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21016_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 74 - 342
Target Start/End: Original strand, 1185876 - 1186129
Alignment:
| Q |
74 |
ctgttaaaatttacttacagaggagccaggtacaccatgcaggaaattatgttacctgcaaatcaaaagaaaaatatgttgatttgttagnnnnnnnaaa |
173 |
Q |
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| T |
1185876 |
ctgtttaaatttacttacagaggagccaagtacaccatgcaggaaattatgttacctgcaaatcaaaagaaaaatatgttgatttgttagtttttttaaa |
1185975 |
T |
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| Q |
174 |
tnnnnnnnttgttataatttaaactataggatatattattataggttgcaaaatcgacaaaacaatcgttagagtgtgaaaaagaattttcaacaactat |
273 |
Q |
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| T |
1185976 |
taaaaaaattgttataattgaaactata---------------ggttgcaaaatcgacaaaacaatcgttagagtgtgaaaaagaattttcaacaactat |
1186060 |
T |
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| Q |
274 |
atatgaagttggaatttgtgatcaacccatacgtcaactataattcataatcatagcaagggggctatc |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186061 |
atatgaagttggaatttgtgatcaacccatacgtcaactataattcataatcatagcaagggggctatc |
1186129 |
T |
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