View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21016_low_9 (Length: 331)

Name: NF21016_low_9
Description: NF21016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21016_low_9
NF21016_low_9
[»] chr3 (24 HSPs)
chr3 (207-331)||(4055228-4055352)
chr3 (213-331)||(4050094-4050212)
chr3 (213-331)||(5481288-5481406)
chr3 (209-331)||(6852748-6852870)
chr3 (213-331)||(6857855-6857973)
chr3 (213-331)||(10672738-10672856)
chr3 (213-331)||(10677851-10677969)
chr3 (214-331)||(8465036-8465153)
chr3 (214-331)||(10584659-10584776)
chr3 (208-331)||(33702394-33702517)
chr3 (213-331)||(10591095-10591213)
chr3 (213-331)||(31081307-31081425)
chr3 (213-331)||(8458598-8458716)
chr3 (214-331)||(1302045-1302162)
chr3 (214-331)||(31076201-31076320)
chr3 (209-331)||(5457812-5457929)
chr3 (214-331)||(49784831-49784949)
chr3 (210-311)||(269483-269584)
chr3 (216-331)||(20891434-20891550)
chr3 (213-270)||(29827829-29827886)
chr3 (213-265)||(18023913-18023965)
chr3 (257-307)||(18023978-18024028)
chr3 (214-307)||(3187246-3187339)
chr3 (216-268)||(18023324-18023376)
[»] chr7 (11 HSPs)
chr7 (212-331)||(12857075-12857194)
chr7 (213-331)||(26051307-26051425)
chr7 (213-331)||(26060666-26060784)
chr7 (213-331)||(26056420-26056538)
chr7 (213-331)||(26065779-26065897)
chr7 (213-331)||(12851962-12852080)
chr7 (248-331)||(14610615-14610698)
chr7 (213-270)||(2248852-2248909)
chr7 (214-268)||(4181276-4181330)
chr7 (213-270)||(37459702-37459759)
chr7 (214-259)||(35352121-35352166)
[»] chr8 (12 HSPs)
chr8 (213-331)||(14318415-14318533)
chr8 (213-331)||(26986789-26986907)
chr8 (213-331)||(34108517-34108635)
chr8 (214-331)||(26981676-26981793)
chr8 (214-331)||(18493978-18494095)
chr8 (212-331)||(14314710-14314829)
chr8 (250-331)||(10340754-10340836)
chr8 (214-295)||(43956651-43956732)
chr8 (214-261)||(10340698-10340745)
chr8 (217-261)||(18608435-18608479)
chr8 (214-270)||(1782181-1782237)
chr8 (249-287)||(18608487-18608525)
[»] chr6 (9 HSPs)
chr6 (213-331)||(21276059-21276177)
chr6 (215-299)||(11182989-11183073)
chr6 (214-270)||(21936408-21936464)
chr6 (213-291)||(20751880-20751957)
chr6 (216-270)||(12909621-12909675)
chr6 (216-270)||(12934728-12934782)
chr6 (213-299)||(21937943-21938029)
chr6 (250-296)||(12909575-12909621)
chr6 (250-296)||(12934682-12934728)
[»] chr5 (14 HSPs)
chr5 (213-331)||(9877339-9877457)
chr5 (214-331)||(9872225-9872342)
chr5 (213-331)||(39904131-39904249)
chr5 (213-331)||(39909244-39909362)
chr5 (208-296)||(13556099-13556187)
chr5 (219-294)||(24091794-24091869)
chr5 (250-307)||(2024354-2024411)
chr5 (213-270)||(43540563-43540620)
chr5 (213-261)||(2024420-2024468)
chr5 (213-265)||(4555967-4556019)
chr5 (214-271)||(35368623-35368680)
chr5 (250-296)||(43540620-43540666)
chr5 (246-287)||(43401906-43401947)
chr5 (252-331)||(4555880-4555960)
[»] chr4 (24 HSPs)
chr4 (213-331)||(35091201-35091319)
chr4 (214-331)||(35096314-35096431)
chr4 (214-329)||(32429034-32429150)
chr4 (213-331)||(3424113-3424231)
chr4 (213-291)||(34279253-34279331)
chr4 (207-270)||(47071758-47071821)
chr4 (258-331)||(3409393-3409467)
chr4 (250-331)||(18716825-18716907)
chr4 (250-331)||(18737498-18737580)
chr4 (213-271)||(22119073-22119131)
chr4 (223-296)||(54858987-54859060)
chr4 (265-331)||(18671175-18671242)
chr4 (214-270)||(14643526-14643582)
chr4 (214-261)||(3409329-3409376)
chr4 (214-272)||(25618050-25618108)
chr4 (212-296)||(34128120-34128205)
chr4 (214-270)||(34601825-34601881)
chr4 (218-267)||(18737586-18737634)
chr4 (214-270)||(30019638-30019692)
chr4 (250-296)||(14643582-14643628)
chr4 (218-256)||(18716920-18716958)
chr4 (250-296)||(30019692-30019738)
chr4 (250-296)||(47071712-47071758)
chr4 (255-291)||(34601886-34601922)
[»] chr1 (24 HSPs)
chr1 (213-331)||(28574583-28574701)
chr1 (213-331)||(28598595-28598713)
chr1 (214-331)||(3468354-3468471)
chr1 (214-327)||(43359091-43359205)
chr1 (211-291)||(16051511-16051591)
chr1 (242-325)||(3701293-3701377)
chr1 (215-270)||(17414304-17414359)
chr1 (216-270)||(13654676-13654730)
chr1 (216-270)||(35653036-35653090)
chr1 (214-270)||(1188333-1188389)
chr1 (220-270)||(19311180-19311230)
chr1 (250-325)||(17414359-17414435)
chr1 (225-270)||(10186056-10186101)
chr1 (227-270)||(1188178-1188221)
chr1 (214-268)||(3696111-3696165)
chr1 (218-270)||(10186307-10186359)
chr1 (252-307)||(3696169-3696224)
chr1 (250-296)||(19311134-19311180)
chr1 (213-271)||(21430776-21430833)
chr1 (250-299)||(1188129-1188178)
chr1 (214-267)||(35626539-35626591)
chr1 (256-291)||(44523933-44523968)
chr1 (250-292)||(10186359-10186401)
chr1 (250-294)||(35653090-35653134)
[»] chr2 (11 HSPs)
chr2 (214-331)||(14917183-14917300)
chr2 (212-331)||(17719998-17720117)
chr2 (213-331)||(17720326-17720444)
chr2 (214-331)||(39178885-39179002)
chr2 (214-331)||(45120673-45120790)
chr2 (214-331)||(30283251-30283368)
chr2 (213-268)||(42780542-42780597)
chr2 (250-299)||(20892154-20892203)
chr2 (214-296)||(716634-716715)
chr2 (250-296)||(42780494-42780540)
chr2 (226-262)||(20892110-20892146)
[»] scaffold0223 (1 HSPs)
scaffold0223 (210-331)||(1816-1937)
[»] scaffold0006 (1 HSPs)
scaffold0006 (216-270)||(144437-144491)
[»] scaffold0005 (2 HSPs)
scaffold0005 (214-270)||(173710-173766)
scaffold0005 (250-296)||(173664-173710)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 4055352 - 4055228
Alignment:
Q  207 tattttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattt 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4055352 tatttgttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattt 4055253  T
Q  307 attattaataatgaaccatgacatt 331  Q
    |||||||||||||||||||||||||    
T  4055252 attattaataatgaaccatgacatt 4055228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 4050212 - 4050094
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050212 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 4050113  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  4050112 aataatgaaccatgacatt 4050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 5481288 - 5481406
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5481288 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 5481387  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  5481388 aataatgaaccatgacatt 5481406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 6852748 - 6852870
Alignment:
Q  209 ttttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttat 308  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852748 ttttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttat 6852847  T
Q  309 tattaataatgaaccatgacatt 331  Q
    |||||||||||||||||||||||    
T  6852848 tattaataatgaaccatgacatt 6852870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 6857855 - 6857973
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857855 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 6857954  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  6857955 aataatgaaccatgacatt 6857973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 10672738 - 10672856
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672738 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 10672837  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  10672838 aataatgaaccatgacatt 10672856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 10677851 - 10677969
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10677851 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 10677950  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  10677951 aataatgaaccatgacatt 10677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 8465153 - 8465036
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8465153 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 8465054  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  8465053 ataatgaaccatgacatt 8465036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 10584659 - 10584776
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584659 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 10584758  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  10584759 ataatgaaccatgacatt 10584776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 33702394 - 33702517
Alignment:
Q  208 attttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33702394 attttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacataggaacattattattta 33702493  T
Q  308 ttattaataatgaaccatgacatt 331  Q
    ||||||||||||||||||||||||    
T  33702494 ttattaataatgaaccatgacatt 33702517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 10591095 - 10591213
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591095 ttgtcggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 10591194  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  10591195 aataatgaaccatgacatt 10591213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 31081307 - 31081425
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081307 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatgggaaccattcatatacattggaacattattatttattatt 31081406  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  31081407 aataatgaaccatgacatt 31081425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 8458716 - 8458598
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458716 ttgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 8458617  T
Q  313 aataatgaaccatgacatt 331  Q
    ||||||||||||| |||||    
T  8458616 aataatgaaccataacatt 8458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 1302045 - 1302162
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1302045 tgttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatatattggaacattattatttattatta 1302144  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  1302145 ataatgaaccatgacatt 1302162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 31076201 - 31076320
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttat--tat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  |||    
T  31076201 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatggaaaccattcatatacattggaacattattatttattgtat 31076300  T
Q  312 taataatgaaccatgacatt 331  Q
    ||||||||||||||||||||    
T  31076301 taataatgaaccatgacatt 31076320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 5457812 - 5457929
Alignment:
Q  209 ttttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttat 308  Q
    |||| |||||||||||||||||||||||||||     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5457812 ttttatgttggtgatttccaaaataatggaat-----tagaatcaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttat 5457906  T
Q  309 tattaataatgaaccatgacatt 331  Q
    |||||||||||||||||||||||    
T  5457907 tattaataatgaaccatgacatt 5457929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 49784949 - 49784831
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt-att 312  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||     
T  49784949 tgttggtgatttccaaaataatagaatcactttaaaaccaaaagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgata 49784850  T
Q  313 aataatgaaccatgacatt 331  Q
     ||||||||||||||||||    
T  49784849 gataatgaaccatgacatt 49784831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 269584 - 269483
Alignment:
Q  210 tttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  269584 tttttgttggtgatttccaaaataatggaatcactttagaatcaaaagttgtagctctttatggaaaccattcatatatattggaacattattatttatt 269485  T
Q  310 at 311  Q
    ||    
T  269484 at 269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 20891550 - 20891434
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||| | ||  |    
T  20891550 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaatcattcatatacattgaaaaattattatttactgataga 20891451  T
Q  315 taatgaaccatgacatt 331  Q
    ||||||||||| |||||    
T  20891450 taatgaaccataacatt 20891434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 29827886 - 29827829
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  29827886 ttgttggtgatttccaaaagaatggaatcactttagaatcaaaagttgtaactcttca 29827829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 18023913 - 18023965
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaact 265  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18023913 ttgttggtgatttccaaaataatggaatcactttataaccaaaagttgtaact 18023965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 18023978 - 18024028
Alignment:
Q  257 gttgtaactcttcatgggaaccattcatatacattggaacattattattta 307  Q
    ||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  18023978 gttgtaactcttcataggaatcaatcatatacattggaacattattattta 18024028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 3187246 - 3187339
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 307  Q
    |||| |||||||  |||| ||| ||||||||||| || |||||||||||| | || ||| ||| ||||||||| |||||||||| |||||||||    
T  3187246 tgtttgtgatttttaaaacaattgaatcactttaaaatcaaaagttgtaattttttatgagaatcattcatatgcattggaacaatattattta 3187339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 18023324 - 18023376
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactctt 268  Q
    |||||||||||||||||||||||||||||||||||   |||||||||| ||||    
T  18023324 ttggtgatttccaaaataatggaatcactttagaattgaaagttgtaagtctt 18023376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 12857194 - 12857075
Alignment:
Q  212 tttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857194 tttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattat 12857095  T
Q  312 taataatgaaccatgacatt 331  Q
    ||||||||||||||||||||    
T  12857094 taataatgaaccatgacatt 12857075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 26051425 - 26051307
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26051425 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 26051326  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  26051325 aataatgaaccatgacatt 26051307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 26060784 - 26060666
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060784 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 26060685  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  26060684 aataatgaaccatgacatt 26060666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 26056538 - 26056420
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056538 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 26056439  T
Q  313 aataatgaaccatgacatt 331  Q
     ||||||||||||||||||    
T  26056438 gataatgaaccatgacatt 26056420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 26065897 - 26065779
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26065897 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 26065798  T
Q  313 aataatgaaccatgacatt 331  Q
     ||||||||||||||||||    
T  26065797 gataatgaaccatgacatt 26065779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 12852080 - 12851962
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  12852080 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattgttacattattatttattatt 12851981  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  12851980 aataatgaaccatgacatt 12851962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 14610698 - 14610615
Alignment:
Q  248 gaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaaccatgacatt 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610698 gaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaaccatgacatt 14610615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 2248852 - 2248909
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  2248852 ttgttggtgatttctaaaataatggaatcactttagaaccaaaagtagtaactcttca 2248909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 4181276 - 4181330
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactctt 268  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4181276 tgttggtgatttccaaaataatggaatcactttaaaatcaaaagttgcaactctt 4181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 37459702 - 37459759
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||| |||||||  |||||||||||||||||||| || |||||||| ||||||||||    
T  37459702 ttgttagtgatttttaaaataatggaatcactttaaaatcaaaagttttaactcttca 37459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 35352121 - 35352166
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 259  Q
    |||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  35352121 tgttggtgatttccgaaataatgaaattactttagaatcaaaagtt 35352166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 14318415 - 14318533
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14318415 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 14318514  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  14318515 aataatgaaccatgacatt 14318533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 26986789 - 26986907
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26986789 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 26986888  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  26986889 aataatgaaccatgacatt 26986907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 34108635 - 34108517
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34108635 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 34108536  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  34108535 aataatgaaccatgacatt 34108517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 26981676 - 26981793
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26981676 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26981775  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  26981776 ataatgaaccatgacatt 26981793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 18493978 - 18494095
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18493978 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 18494077  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  18494078 ataatgaaccatgacatt 18494095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 14314710 - 14314829
Alignment:
Q  212 tttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattat 311  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  14314710 tttgttggtgattttcaaaataatggaattactttagaaccaaaagttgtaactcttaatgggaaccattcgtatacattggaacattattatttattat 14314809  T
Q  312 taataatgaaccatgacatt 331  Q
    ||||||||||||||||||||    
T  14314810 taataatgaaccatgacatt 14314829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 10340754 - 10340836
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacatt 331  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  10340754 accaagagttgtaactcttcatggaaaccattcatatacattggaacattattatttattgatagataatgaaccatgacatt 10340836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 43956651 - 43956732
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaa 295  Q
    ||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||| || | ||||||||||||||||    
T  43956651 tgttggtgatttttaaaataatggaatcactttagaatcaagagttgtaactcttcatggaaatctttcatatacattggaa 43956732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 10340698 - 10340745
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgt 261  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  10340698 tgttggtgatttcccaaataatggaatcactttagaaccaaaagttgt 10340745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 18608435 - 18608479
Alignment:
Q  217 tggtgatttccaaaataatggaatcactttagaaccaaaagttgt 261  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  18608435 tggtgatttccaaaataatggaatcactttagaactaaaagttgt 18608479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 1782237 - 1782181
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||| |||||| ||||||||||||| | |||||||| ||||||| ||||||||||    
T  1782237 tgttggagatttctaaaataatggaattattttagaacaaaaagttataactcttca 1782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 18608487 - 18608525
Alignment:
Q  249 aaccaaaagttgtaactcttcatgggaaccattcatata 287  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  18608487 aaccaagagttgtaactcttcatgggaatcattcatata 18608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 21276177 - 21276059
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21276177 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 21276078  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  21276077 aataatgaaccatgacatt 21276059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 11182989 - 11183073
Alignment:
Q  215 gttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 299  Q
    |||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| || | ||||||||||||||||||||    
T  11182989 gttggtcatttctaaaataatggaatcaatttagaaccaaatgttgtaactcttcatggaaatctttcatatacattggaacatt 11183073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 21936408 - 21936464
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936408 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 21936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 20751880 - 20751957
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacatt 291  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||| ||||||||||||    
T  20751880 ttgttggtgatttccaaaataatggattcactttag-atcaaaagttgtaactcttcatgagaacctttcatatacatt 20751957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 12909675 - 12909621
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12909675 ttggtgatttctaaaataatggaatcactttagaaccaaaagttgtaactcttca 12909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 12934782 - 12934728
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12934782 ttggtgatttccaaaataatggaatcactctagaaccaaaagttgtaactcttca 12934728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 21938029 - 21937943
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 299  Q
    |||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||  ||   ||| ||||||||||||||||    
T  21938029 ttgttggtgatttccaaaataatggaatcattttagaaccataatatgtaactcttcatgaaaatatttcgtatacattggaacatt 21937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 12909621 - 12909575
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  12909621 accaagagttgtaacttttcatgagaatcattcatatacattggaac 12909575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 12934728 - 12934682
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  12934728 accaagagttgtaacttttcatgagaatcattcatatacattggaac 12934682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 9877339 - 9877457
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9877339 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 9877438  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  9877439 aataatgaaccatgacatt 9877457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 9872225 - 9872342
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872225 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 9872324  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  9872325 ataatgaaccatgacatt 9872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 39904249 - 39904131
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39904249 ttgttggtgatttccaaaataattgaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 39904150  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  39904149 aataatgaaccatgacatt 39904131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 39909362 - 39909244
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  39909362 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcgtgtaaaccattcatatacattggaacattattatttattatt 39909263  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  39909262 aataatgaaccatgacatt 39909244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 13556099 - 13556187
Alignment:
Q  208 attttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||    
T  13556099 attttctgttggtgatttccaaaataatggaatcactttaaaaccaagagttgtaactcttcatgggaatctttcatatacattggaac 13556187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 24091794 - 24091869
Alignment:
Q  219 gtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattgga 294  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||| | |||||||||||||||    
T  24091794 gtgatttccaaaataatagaatcactttagaaccaagagttgtaactctttatgagaatctttcatatacattgga 24091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 2024411 - 2024354
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 307  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2024411 accaagagttgtaactcttcacgggaaccattcatatacattggaacattattattta 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 43540563 - 43540620
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43540563 ttgttggtgatttccaaaataattgaatcaatttagaaccaaaagttgtaactcttca 43540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 2024468 - 2024420
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2024468 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgt 2024420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 4556019 - 4555967
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaact 265  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  4556019 ttgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaact 4555967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 35368623 - 35368680
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcat 271  Q
    ||||||| ||||| |||| |||||||||||||||||| |||||||||||||| |||||    
T  35368623 tgttggtaatttctaaaagaatggaatcactttagaatcaaaagttgtaacttttcat 35368680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 43540620 - 43540666
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||||||    
T  43540620 accaagagttgtaactcttcatggtaattattcatatacattggaac 43540666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 43401906 - 43401947
Alignment:
Q  246 tagaaccaaaagttgtaactcttcatgggaaccattcatata 287  Q
    ||||||||||||||||||||| |||||| || ||||||||||    
T  43401906 tagaaccaaaagttgtaactcatcatggaaatcattcatata 43401947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 4555960 - 4555880
Alignment:
Q  252 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacatt 331  Q
    |||||||| || ||||||| || || ||||||||||||||| || ||||||||||| ||||  ||| |||||||| |||||    
T  4555960 caaaagttatacctcttcacggaaatcattcatatacattgaaaaattattatttacttatagatagtgaaccataacatt 4555880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 35091319 - 35091201
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091319 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 35091220  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  35091219 aataatgaaccatgacatt 35091201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 35096431 - 35096314
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096431 tgttggtgatttccaaaataatggaatcactttagaacaaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 35096332  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  35096331 ataatgaaccatgacatt 35096314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 32429034 - 32429150
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt-att 312  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||     
T  32429034 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgata 32429133  T
Q  313 aataatgaaccatgaca 329  Q
     ||||||||||||||||    
T  32429134 gataatgaaccatgaca 32429150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 3424113 - 3424231
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt-at 311  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||    
T  3424113 ttgtttgtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaacca-tcatatacattggaacattattatttattgat 3424211  T
Q  312 taataatgaaccatgacatt 331  Q
      ||||||||||||||||||    
T  3424212 agataatgaaccatgacatt 3424231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 34279253 - 34279331
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacatt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| ||||||||||||||    
T  34279253 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagtttcaattcttcatgggaatcattcatatacatt 34279331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 47071821 - 47071758
Alignment:
Q  207 tattttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47071821 tattttttgttggtgatttccaaaataatggaatcactttacaaccaaaagttgtaactcttca 47071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 3409393 - 3409467
Alignment:
Q  258 ttgtaactcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacatt 331  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  3409393 ttgtaactcttcatgagaaccattcatatacattggaacattattatttattgatagataatgaaccatgacatt 3409467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 18716907 - 18716825
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacatt 331  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||    
T  18716907 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacatt 18716825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 18737580 - 18737498
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacatt 331  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||    
T  18737580 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacatt 18737498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 22119131 - 22119073
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcat 271  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22119131 ttgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtaactcttcat 22119073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 54858987 - 54859060
Alignment:
Q  223 tttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||    
T  54858987 tttccaaaataatagaatcactttacaaccaaaaattgtaactcttcattggaatcattcatatacattggaac 54859060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 18671242 - 18671175
Alignment:
Q  265 tcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacatt 331  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  18671242 tcttcatgggaaccattcatatacattggtacattattatttattgataaataatgaaccatgacatt 18671175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 14643526 - 14643582
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  14643526 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 14643582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 3409329 - 3409376
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgt 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  3409329 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgt 3409376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 25618050 - 25618108
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatg 272  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||    
T  25618050 tgttggtgatttccaaaatattggaatcactttagaactaagagttgtaactgttcatg 25618108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 34128120 - 34128205
Alignment:
Q  212 tttgttggtgatttccaaaa-taatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||   || ||| | |||||||| ||||||||    
T  34128120 tttgttggtgatttccaaaaattatggaatcattttagaaccaaaagttgtaactctctgtgagaatctttcatatatattggaac 34128205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 34601825 - 34601881
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||    
T  34601825 tgttggtgatttctaaaataatggaatcattttagaactaaaagttgtaacttttca 34601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 18737634 - 18737586
Alignment:
Q  218 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactct 267  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  18737634 ggtgatttccaaaataatggaatcagtttagaaccaaaa-ttgtaactct 18737586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 30019638 - 30019692
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||||    
T  30019638 tgttggtgatttctaaaataatggaatcactttagaatc--aagttgtaactcttca 30019692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 14643582 - 14643628
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||    
T  14643582 accaagagttgtaactattcatgggaatcattcatatacattggaac 14643628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 18716958 - 18716920
Alignment:
Q  218 ggtgatttccaaaataatggaatcactttagaaccaaaa 256  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  18716958 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 30019692 - 30019738
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||    
T  30019692 accaagagttgtaactcttcatgggaatctttcatatacattggaac 30019738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 47071758 - 47071712
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||||||||||  || |||||||||||||||||||    
T  47071758 accaagagttgtaactcttcatgaaaatcattcatatacattggaac 47071712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 34601886 - 34601922
Alignment:
Q  255 aagttgtaactcttcatgggaaccattcatatacatt 291  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  34601886 aagttgtaactcttcatgagaatcattcatatacatt 34601922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 28574701 - 28574583
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574701 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 28574602  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  28574601 aataatgaaccatgacatt 28574583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 28598713 - 28598595
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598713 ttgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 28598614  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  28598613 aataatgaaccatgacatt 28598595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 3468471 - 3468354
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3468471 tgttggtgatttccaaaataatggaatcattttagaatcaaaagttgtaattcttcataggaaccattcatatacattggaacattattatttattatta 3468372  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  3468371 ataatgaaccatgacatt 3468354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 214 - 327
Target Start/End: Complemental strand, 43359205 - 43359091
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt-att 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||    
T  43359205 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatgagaatcattcatatacattggaacattattatttattgatt 43359106  T
Q  313 aataatgaaccatga 327  Q
     ||||||||||||||    
T  43359105 gataatgaaccatga 43359091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 16051591 - 16051511
Alignment:
Q  211 ttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacatt 291  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  16051591 ttttgttggtgatttctaaaataatggaatcactttagaaccaaaagttataactctttatgggaatcattcatatacatt 16051511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 3701293 - 3701377
Alignment:
Q  242 actttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccat 325  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| || || ||||||||||||    
T  3701293 actttagaaccaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataatgaaccat 3701377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 17414304 - 17414359
Alignment:
Q  215 gttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17414304 gttggtgatttccaaaataatggaatcactttagaaccaaaacttgtaactcttca 17414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 13654730 - 13654676
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13654730 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 13654676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 35653036 - 35653090
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35653036 ttggtgatttccaaaataatggaatcactttggaaccaaaagttgtaactcttca 35653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 1188389 - 1188333
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  1188389 tgttggtgatttccaaaataatggaatcactttagaaccaaaaattgtaacttttca 1188333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 19311230 - 19311180
Alignment:
Q  220 tgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19311230 tgatttccaaaataatggaatcactttataaccaaaagttgtaactcttca 19311180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 17414359 - 17414435
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccat 325  Q
    ||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||||| || || ||||||||||||    
T  17414359 accaaaagttgtaactcttcattagaatcattcatatacattagaacattattatttactaatagataatgaaccat 17414435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 10186101 - 10186056
Alignment:
Q  225 tccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  10186101 tccaaaataatggaatcactttagaatcaaaagttgtaactcttca 10186056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 1188221 - 1188178
Alignment:
Q  227 caaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  1188221 caaaataatggaatcactttagaaccaaaagttgtaacttttca 1188178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 3696111 - 3696165
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactctt 268  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  3696111 tgttggtaatttctaaaataatggaatcactttggaatcaaaagttgtaactctt 3696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 10186307 - 10186359
Alignment:
Q  218 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||| |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  10186307 ggtgctttccaaaataatggaatcactttagactcaaaagttttaactcttca 10186359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 3696169 - 3696224
Alignment:
Q  252 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 307  Q
    ||||||||| |||| |||||||||| ||||||||||||||  ||||||||||||||    
T  3696169 caaaagttgcaacttttcatgggaatcattcatatacattaaaacattattattta 3696224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 19311180 - 19311134
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||    
T  19311180 accaagagttgtaactcttcatgggaatctttcatatacattggaac 19311134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 21430776 - 21430833
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcat 271  Q
    ||||||||||||| ||||||||| |||||| ||||| | ||||||||||||||||||||    
T  21430776 ttgttggtgattttcaaaataatagaatcattttag-atcaaaagttgtaactcttcat 21430833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 1188178 - 1188129
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 299  Q
    ||||| |||||||||| |||||||||| | ||||||||||||||||||||    
T  1188178 accaagagttgtaactattcatgggaatctttcatatacattggaacatt 1188129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 35626591 - 35626539
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactct 267  Q
    ||||||||||||| ||||||||||||||||||||| | ||||| ||||||||||    
T  35626591 tgttggtgatttctaaaataatggaatcactttag-atcaaaaattgtaactct 35626539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 44523933 - 44523968
Alignment:
Q  256 agttgtaactcttcatgggaaccattcatatacatt 291  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44523933 agttgtaactcttcatgggaatcattcatatacatt 44523968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 10186359 - 10186401
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattg 292  Q
    ||||| ||||||||||||||||||||| | |||||||||||||    
T  10186359 accaagagttgtaactcttcatgggaatctttcatatacattg 10186401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 35653090 - 35653134
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattgga 294  Q
    ||||| ||||||||| ||||||||||| |||||||||| ||||||    
T  35653090 accaagagttgtaacacttcatgggaatcattcatatatattgga 35653134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 14917183 - 14917300
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14917183 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 14917282  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  14917283 ataatgaaccatgacatt 14917300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 17719998 - 17720117
Alignment:
Q  212 tttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17719998 tttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaactattcatatacattggaacattattatttattat 17720097  T
Q  312 taataatgaaccatgacatt 331  Q
    ||||||||||||||||||||    
T  17720098 taataatgaaccatgacatt 17720117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 17720326 - 17720444
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 312  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17720326 ttgttggtgatttccaaaataatagaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 17720425  T
Q  313 aataatgaaccatgacatt 331  Q
    |||||||||||||||||||    
T  17720426 aataatgaaccatgacatt 17720444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 39179002 - 39178885
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39179002 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 39178903  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  39178902 ataatgaaccatgacatt 39178885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 45120790 - 45120673
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45120790 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactcttcatgggaaccattcatatacattgaaacattattatttattatta 45120691  T
Q  314 ataatgaaccatgacatt 331  Q
    ||||||||||||||||||    
T  45120690 ataatgaaccatgacatt 45120673  T

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Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 30283251 - 30283368
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 313  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  30283251 tgttggtgatttccaaaataatggaatcattttagaaccaaaagttgtaactcttcatgggaaccattcatgtacattggaacattattatttattattg 30283350  T
Q  314 ataatgaaccatgacatt 331  Q
    ||| ||||||||||||||    
T  30283351 atactgaaccatgacatt 30283368  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 42780597 - 42780542
Alignment:
Q  213 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactctt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42780597 ttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttactctt 42780542  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 20892154 - 20892203
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 299  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  20892154 accaagagttgtaactcttcatgagaaccattcatatacattggaacatt 20892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 716715 - 716634
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| ||||||  ||||||||||||||| ||||||   |||||||||||||||| ||| ||| | |||||||||||||||||    
T  716715 tgttgatgatttttaaaataatggaatcattttagatt-aaaagttgtaactctttatgtgaatctttcatatacattggaac 716634  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 42780540 - 42780494
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||    
T  42780540 accaaaagttgtaactcttcatgagaatctttcatatacattggaac 42780494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 20892110 - 20892146
Alignment:
Q  226 ccaaaataatggaatcactttagaaccaaaagttgta 262  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20892110 ccaaaataatggaatcactttaaaaccaaaagttgta 20892146  T

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Target: scaffold0223 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 1816 - 1937
Alignment:
Q  210 tttttgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttatt 309  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  1816 tttttgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtatctcttcatgggaaccattcatatacattggaacattactatttatt 1915  T
Q  310 attaataatgaaccatgacatt 331  Q
    ||||||||||||||||||||||    
T  1916 attaataatgaaccatgacatt 1937  T

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Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 144491 - 144437
Alignment:
Q  216 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  144491 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 144437  T

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Target: scaffold0005 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 173766 - 173710
Alignment:
Q  214 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 270  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  173766 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 173710  T

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Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 173710 - 173664
Alignment:
Q  250 accaaaagttgtaactcttcatgggaaccattcatatacattggaac 296  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||    
T  173710 accaagagttgtaactattcatgggaatcattcatatacattggaac 173664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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