View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21017_low_2 (Length: 504)
Name: NF21017_low_2
Description: NF21017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21017_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 10230211 - 10230688
Alignment:
| Q |
18 |
gtgatcaccatcaaattttatgatatttttatctccctacatttagaggccaagttagacgttttgtttatgtgaagagggtgctaaacagaaaattgca |
117 |
Q |
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| T |
10230211 |
gtgatcaccatcaaattttatgatatttttatctccctacatttagaggccaagttagacgttttgtttatgtgaagagggtgctaaacagaaaattgca |
10230310 |
T |
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| Q |
118 |
tcataaacatttcgtcaaatgtttgaaataataccgcatatgattcagcgatgagatcagagtgatgaggctgaacaaagtcgtcgtcgttaccatgtcc |
217 |
Q |
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| T |
10230311 |
tcataaacatttcgtcaaatgtttgaaataataccgcatatgattcagcgatgagatcagagtgatgaggctgaacaaagtcgtcgtcgttaccatgtcc |
10230410 |
T |
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| Q |
218 |
aaataaaaccggaatgaatgtcttcggtgctgcctgtaagattttaaatcatactttaagaaagttttgggaaggaaataactctgcttaacagcttgta |
317 |
Q |
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| T |
10230411 |
aaataaaaccggaatgaatgtcttcggtgctgcctgtaagattttaaatcatactttaagaaagttttgggaaggaaataactctgcttaacagcttgta |
10230510 |
T |
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| Q |
318 |
caataagaaaataaatgttgccacaccaagtgtgtgtttgaattaacttaatctaggtccaaaacaactcaattagaata-tttttccatcacaatttta |
416 |
Q |
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| T |
10230511 |
caatcagaaaataaatgttgccacactaagtgtgtgtttgaattaacttaatctatgtccaaaacaactcaattagaatatttttttcattacaatttta |
10230610 |
T |
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| Q |
417 |
aaaagaaactgtagagttaaagcaaataatccatacctgcaaacagttaaggtccataatatcaaactttgctttctt |
494 |
Q |
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| T |
10230611 |
aaaagaaactgtagggttaaagcaaataatccatacctgcaaacagttaaggtccataatatcaaactttgctttctt |
10230688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 412 - 494
Target Start/End: Original strand, 10841805 - 10841886
Alignment:
| Q |
412 |
ttttaaaaagaaactgtagagttaaagcaaataatccatacctgcaaacagttaaggtccataatatcaaactttgctttctt |
494 |
Q |
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| T |
10841805 |
ttttaaaaataaactgcagaattaaagtaaata-tccatacatgcaaacagttaaggtccatagtatcaaactttgctttctt |
10841886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 56246407 - 56246505
Alignment:
| Q |
146 |
taataccgcatatgattcagcgatgagatcagagtgatgaggctgaacaaagtcgtcgtcgttaccatgtccaaataaaaccggaatgaatgtcttcgg |
244 |
Q |
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| T |
56246407 |
taatactgcataggattctgagatgagatcagagtgatgtggctgaatgaatttgtcatcacttgcatgtccaaataaaacaggaatgaatgtcttcgg |
56246505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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