View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21017_low_3 (Length: 455)

Name: NF21017_low_3
Description: NF21017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21017_low_3
NF21017_low_3
[»] chr6 (12 HSPs)
chr6 (16-332)||(2909906-2910222)
chr6 (16-320)||(2860491-2860795)
chr6 (16-332)||(2865870-2866186)
chr6 (16-332)||(2842122-2842438)
chr6 (16-320)||(2885060-2885364)
chr6 (16-332)||(2833182-2833498)
chr6 (16-326)||(14577866-14578176)
chr6 (16-266)||(2828830-2829080)
chr6 (325-439)||(2910440-2910554)
chr6 (326-441)||(2885575-2885690)
chr6 (326-439)||(2861011-2861124)
chr6 (326-439)||(2866390-2866503)
[»] chr7 (1 HSPs)
chr7 (100-230)||(1800792-1800922)
[»] chr1 (1 HSPs)
chr1 (16-217)||(6971135-6971336)
[»] chr5 (1 HSPs)
chr5 (158-221)||(8052204-8052267)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 2909906 - 2910222
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2909906 caatcaatatcgtcaataactataatcgatttactcgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattgaagatcat 2910005  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910006 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 2910105  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  2910106 aactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttccttcttctccggttccatagcaagtgtttcaaaccttgca 2910205  T
Q  316 gggtgctcaaaagttgt 332  Q
    |||||||||||||||||    
T  2910206 gggtgctcaaaagttgt 2910222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 2860491 - 2860795
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| |||||||| ||||  ||||| |  || |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  2860491 caatcaatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtctttttaactcattgttatccttgacagttgttaattcaagatcat 2860590  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    | ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| |||||||| ||||||||    
T  2860591 acacgtcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttcc 2860690  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  2860691 aactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgca 2860790  T
Q  316 gggtg 320  Q
    |||||    
T  2860791 gggtg 2860795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 2865870 - 2866186
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| |||||||| ||||  ||||| |  || ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  2865870 caatcaatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcat 2865969  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    | || || |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| |||||||| ||||||||    
T  2865970 atacatcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccgcgtttccaagcctttcc 2866069  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  2866070 aactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgca 2866169  T
Q  316 gggtgctcaaaagttgt 332  Q
    |||||| ||||| ||||    
T  2866170 gggtgcgcaaaatttgt 2866186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 2842438 - 2842122
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| |||||||| |||||||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2842438 caatcaatatcttcaataacaataatcgatttactcgacgtctcaatcaaaagtcttttcaactcattgttatccttgacaattgttaattcaagatcat 2842339  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    | || ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||| || |||||    
T  2842338 acacatcatagttcatgaaattagcaatagccgatatcatggtagatttaccggttcctggaggaccaaaaagtagataaccacgtttccaagcttttcc 2842239  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| ||||  |||| |||  |||| |  ||||||| ||||||||||||||| |||||     
T  2842238 aactttagcataatactctttccctttcttgaatttaacaagatcatttagaatctcttctttcttttttggttccaaagcaagtgtttcaaaacttgcc 2842139  T
Q  316 gggtgctcaaaagttgt 332  Q
    |||||||||||||||||    
T  2842138 gggtgctcaaaagttgt 2842122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 2885060 - 2885364
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| |||||||| ||||  ||||| | ||| ||||||||||||||| |||||||||||| ||||||||||||| | |||||||| |||||||    
T  2885060 caatcaatatcttcaataacgataactgatttgcttgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagtggttaattctagatcat 2885159  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    | || || |||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  2885160 atacatcgtagttcatgaaatttgcaatagccgatatcatggtagatttcccagttcctggtggaccataaagtagataaccccgtttccaagcctttcc 2885259  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  2885260 aactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgca 2885359  T
Q  316 gggtg 320  Q
    |||||    
T  2885360 gggtg 2885364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 2833182 - 2833498
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| || ||||||||||||||||||| ||| || |||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  2833182 caatcaatatcttcgataactataatcgatttacttgacgtttcaatcaaaagtctcttcaactcattgttatccttaacagttgttaattcaagatcat 2833281  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    | || |||||||||||| |||| || ||||| |||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||    
T  2833282 acacatcatagttcatgtaatttgctatagctgatatcatagtagattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttcc 2833381  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||||||| |||| || |||||||| |||| |||||| ||||  |||| ||   |||| || ||||||||||| || ||| |||| ||||||    
T  2833382 aactttagcataatactctttacctttcttgaacttaagaagatcatttaaaatctcttgtttcttttctggttccatagctagggttccaaatcttgca 2833481  T
Q  316 gggtgctcaaaagttgt 332  Q
    || ||||||||||||||    
T  2833482 ggatgctcaaaagttgt 2833498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 14578176 - 14577866
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| ||||| |||||||| ||||| | ||| ||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  14578176 caatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtcttttcaactcattgttatccttgatagttgttaattcaagatcat 14578077  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    ||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||  ||| || |||||| |||||||| ||||||||    
T  14578076 aaacgtcgtagttcataaaatttgcaatagccgatatcatggtagattttccggttcctggaggaccgaaaagtaaataaccgcgtttccaagcctttcc 14577977  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttatgatctattccatcttctccggttccatagcaagtgtttcaaaccttgca 315  Q
    |||||||||||| ||| |||| ||   |||||| ||||||||||||| ||| |||| |||  ||||||  |  ||||||||||||||||| |||||||||    
T  14577976 aactttagcatagtactctttacctgccttgaacttaacaagatcgtctattatctcttctttcttctttgcatccatagcaagtgtttcgaaccttgca 14577877  T
Q  316 gggtgctcaaa 326  Q
    ||||| |||||    
T  14577876 gggtgatcaaa 14577866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 2829080 - 2828830
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| ||||||||||||||||||||||  || ||||| |||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||    
T  2829080 caatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagtcttttcaactcattgttattcttgatagttgttaactcaagatcat 2828981  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    | || ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || |||||| ||| |||||||||||||||||| ||||| ||    
T  2828980 acacatcataattcatgaaattagcaatagctgatatcatcgtagattttccagttccaggaggaccaaaaagtagataaccacgtttccaagccttccc 2828881  T
Q  216 aactttagcataatacactttcccattcttgaatttaacaagatcgtttat 266  Q
     ||||||| ||| ||| |||| ||  | ||||| ||||||||||| |||||    
T  2828880 gactttagtatagtactctttacctgttttgaacttaacaagatcatttat 2828830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 325 - 439
Target Start/End: Complemental strand, 2910554 - 2910440
Alignment:
Q  325 aaagttgtcgaagatagccaaactccggttgtccttggcatagacgacaacgaagagatcaccgatgattttaacggagtcatagtttggtggtctgcaa 424  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||  | |||||||||||||||    
T  2910554 aaagttgtcgaagatagccaaactccggttatctttggcatagacgacaacgaagagatcaccgatgattttaaaggagtcgaaatttggtggtctgcaa 2910455  T
Q  425 acagcacagttccaa 439  Q
    |||||||| ||||||    
T  2910454 acagcacaattccaa 2910440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 441
Target Start/End: Complemental strand, 2885690 - 2885575
Alignment:
Q  326 aagttgtcgaagatagccaaactccggttgtccttggcatagacgacaacgaagagatcaccgatgattttaacggagtcatagtttggtggtctgcaaa 425  Q
    ||||||| |||||||||||| | ||| |||||||| |||| ||||||||||||||||||   ||||| || || ||||||| ||||||||||||||||||    
T  2885690 aagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaa 2885591  T
Q  426 cagcacagttccaaga 441  Q
     |||| || |||||||    
T  2885590 tagcaaagctccaaga 2885575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 2861124 - 2861011
Alignment:
Q  326 aagttgtcgaagatagccaaactccggttgtccttggcatagacgacaacgaagagatcaccgatgattttaacggagtcatagtttggtggtctgcaaa 425  Q
    ||||||| |||||||||||| | ||| |||||||| |||| |||||||| ||||||||    ||||| || || ||||||| ||||||||||||| ||||    
T  2861124 aagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagagattgaggatgagttcaatggagtcaaagtttggtggtcttcaaa 2861025  T
Q  426 cagcacagttccaa 439  Q
    ||||| || |||||    
T  2861024 cagcaaagctccaa 2861011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 2866503 - 2866390
Alignment:
Q  326 aagttgtcgaagatagccaaactccggttgtccttggcatagacgacaacgaagagatcaccgatgattttaacggagtcatagtttggtggtctgcaaa 425  Q
    ||||||| |||||||||||| | ||| |||||||| |||| |||||||| ||||||||    ||||| || || ||||||| ||||||||||||| ||||    
T  2866503 aagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagagattgaggatgagttcaatggagtcaaagtttggtggtcttcaaa 2866404  T
Q  426 cagcacagttccaa 439  Q
    ||||| || |||||    
T  2866403 cagcaaagctccaa 2866390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 1800922 - 1800792
Alignment:
Q  100 gttaattcaagatcataaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccac 199  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||| |||||||| || |||||||| |||||||||| || |||||| |    
T  1800922 gttaattcaagatcataaacatcatagttcatgaaattcgccatagcggctatcatagtagatttacctgttcctggaggaccataaagtaaataaccgc 1800823  T
Q  200 gtttccacgcctttccaactttagcataata 230  Q
    ||||||| ||||| || | ||| ||||||||    
T  1800822 gtttccaagccttaccgatttttgcataata 1800792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 6971336 - 6971135
Alignment:
Q  16 caatcaatatcgtcaataactataatcgatttacctgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattcaagatcat 115  Q
    ||||||||||| ||||| || || || || |||| ||||||||||||||||||  |  ||||||||  ||||||||| |||   || |||||||||||||    
T  6971336 caatcaatatcttcaatcacaattatagacttacttgatgtctcaatcaaaagcttcctcaactcagtgttatccttaacagcagtcaattcaagatcat 6971237  T
Q  116 aaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttcc 215  Q
    |||  ||||||   |  ||||| || || ||||  ||||| || || ||||| || ||||| |||||||||| || |||||| | |||||| ||| ||||    
T  6971236 aaagatcatagcctaacaaatttgccatggcagcaatcattgttgactttccagtccctggaggaccataaagtaaataacctcttttccaagcccttcc 6971137  T
Q  216 aa 217  Q
    ||    
T  6971136 aa 6971135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 8052267 - 8052204
Alignment:
Q  158 tagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttccaacttt 221  Q
    |||||||||| ||||||||||||||||| | ||  |||||||||||||| | ||| ||||||||    
T  8052267 tagattttcctgttcctggtggaccatacaataagtaaccacgtttccaaggcttaccaacttt 8052204  T

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