View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21017_low_4 (Length: 440)
Name: NF21017_low_4
Description: NF21017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21017_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 1254940 - 1255350
Alignment:
| Q |
18 |
atatgaatgtgtgactaaagcaattttttgggtaaaaatttaaaacaatttttgctataacaacaattttaaaacgagttcagattttatatgaatgagt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
1254940 |
atatgaatgtgtgactaaagcaattttttgggtaaaaatttaaaacaatttttggtataacaacaaatttaaaacgagttcagattttatatgaaagagt |
1255039 |
T |
|
| Q |
118 |
gagtcattaacctgaagagccttttctaaatgctcaagaacaaccgtaggaataatccctttaataccacctccatcaatgttgagaatggttattgcat |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||| | |
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| T |
1255040 |
gggtcattaacctgaagagccttttctaaatgctcaagaacaaccgtaggaagaattcccttaataccacctccatcaatgttgagtatggttattgtac |
1255139 |
T |
|
| Q |
218 |
ttccataggtaggaggtggtagctttgtattgaatccaccaatcacttgactagcaaaaacaaacacaaataaaaggaaagaagtcat--tatattgttt |
315 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| || ||| |||||||| | |
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| T |
1255140 |
ttccatatgcaggaggtggtagctttgtattgaatccaccaatcacctgactagcaaaaataaacacaaataaaagaaaagcagccattatatattgtgt |
1255239 |
T |
|
| Q |
316 |
actaattaaagcttcagaagatatacaacacttcaatgaagggcttgcatttttccttccaaatgttaagggtatttataggcat--ttcatgtccatga |
413 |
Q |
| |
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||||||||| |||||| |||| ||| ||| || |||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
1255240 |
actaattaatgcttca-aagagataacacaatt---tgaagggcttgctttcttccttccaagtgttaagggtatttataggcatacatcatgtccatga |
1255335 |
T |
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| Q |
414 |
tgaaaatattaaaat |
428 |
Q |
| |
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||||||||||||||| |
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| T |
1255336 |
tgaaaatattaaaat |
1255350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 1244208 - 1244501
Alignment:
| Q |
18 |
atatgaatgtgtgactaaagcaattttttgggtaaaaatttaaaacaatttttgctataacaacaattttaaaacgagttcagattttatatgaatgagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
1244208 |
atatgaatgtgtgactaaagcaattttttgggtaaaaatttaaaacaagttttggtatagcaacaaatttaaaacaagttcagattttatatgaatgagt |
1244307 |
T |
|
| Q |
118 |
gagtcattaacctgaagagccttttctaaatgctcaagaacaaccgtaggaataatccctttaataccacctccatcaatgttgagaatggttattgcat |
217 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||| | |
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| T |
1244308 |
gggtcattaacctgaagagccttttctaaatgctcaagaacaaccgtaggaagaattcccttaataccacctccatcaatgttgagtatggttattgtac |
1244407 |
T |
|
| Q |
218 |
ttccataggtaggaggtggtagctttgtattgaatccaccaatcacttgactagcaaaaacaaacacaaataaaaggaaagaagtcattatatt |
311 |
Q |
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| T |
1244408 |
ttccatatgcaggaggtggtagctttgtattgaatccaccaatcacctgactagcaaaaacgaacattaataaaaggaaagcagccattatatt |
1244501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 127 - 429
Target Start/End: Original strand, 1202717 - 1203017
Alignment:
| Q |
127 |
acctgaagagccttttctaaatgctcaagaacaaccgtaggaataatccctttaataccacctccatcaatgttgagaatggttattgcatttccatagg |
226 |
Q |
| |
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||||||||||| ||||| || | | ||||| ||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1202717 |
acctgaagagctttttccaagttccgaagaagaacagtaggaagaattcccttaataccacctccatcaatgttgagaatggttattgcatttccatagg |
1202816 |
T |
|
| Q |
227 |
taggaggtggtagctttgtattgaatccaccaatcacttgactagcaaaaacaaacacaaataaaaggaaagaagtcat----tatattgtttactaatt |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| | || | ||| |||||||| |||||||| |
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| T |
1202817 |
taggaggtggtagctttgtattgaatccaccaatcacctgattagcaaaaacaaacataaataaaagaagagcacccattaaatatattgtgtactaatt |
1202916 |
T |
|
| Q |
323 |
aaagcttcagaagatatacaacacttcaatgaagggcttgcatttttccttccaaatgttaagggtatttataggcatttcatgtccatgatgaaaatat |
422 |
Q |
| |
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|| |||| |||| | || ||| || | |||| |||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1202917 |
aatgctt-tcaagaga-ac-acaattga---aaggacttgcattcttcattccaaatgtgaagggtatttataggcatttcatgtccatgatgaaaatat |
1203010 |
T |
|
| Q |
423 |
taaaatt |
429 |
Q |
| |
|
||||||| |
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|
| T |
1203011 |
taaaatt |
1203017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 1280370 - 1280502
Alignment:
| Q |
166 |
ggaataatccctttaataccacctccatcaatgttgagaatggttattgcatttccataggtaggaggtggtagctttgtattgaatccaccaatcactt |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1280370 |
ggaataatccctttaataccacctccatcaatgctgagaatggttattgagtttccataggcaggaggtggtagctttgtattgaatccaccaatcactt |
1280469 |
T |
|
| Q |
266 |
gactagcaaaaacaaacacaaataaaaggaaag |
298 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| |
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| T |
1280470 |
gactagcaaaaacaagcacaaataaaagaaaag |
1280502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 102 - 298
Target Start/End: Original strand, 1229837 - 1230033
Alignment:
| Q |
102 |
ttttatatgaatgagtgagtcattaacctgaagagccttttctaaatgctcaagaacaaccgtaggaataatccctttaataccacctccatcaatgttg |
201 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| ||| || | |||||||||||||||||||| ||| ||||||||||||||||||||||| | |
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| T |
1229837 |
ttttatatgaatgagtgggtcattgacctgaagagcctgttccaagtcctcaagaacaaccgtaggaagaattcctttaataccacctccatcaatacta |
1229936 |
T |
|
| Q |
202 |
agaatggttattgcatttccataggtaggaggtggtagctttgtattgaatccaccaatcacttgactagcaaaaacaaacacaaataaaaggaaag |
298 |
Q |
| |
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|||||| |||||| || |||||| | || |||||||| ||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||| |
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| T |
1229937 |
agaatgcttattgtatctccatacgacggcggtggtagttttttattgaatccaccaatcacctgattagcaaaaacaaacagaaataaaagtaaag |
1230033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 1298224 - 1298049
Alignment:
| Q |
122 |
cattaacctgaagagccttttctaaatgctcaagaacaaccgtaggaataatccctttaataccacctccatcaatgttgagaatggttattgcatttcc |
221 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||| | | ||||| |||||| |||||||||| |||||||| |||||||||| ||| |||||| |
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|
| T |
1298224 |
cattaacctgaagagccttttccaactggtcaagaattattgctggaatgatccctctaataccaccaccatcaatactgagaatggtgattaaatttcc |
1298125 |
T |
|
| Q |
222 |
ataggtaggaggtggtagctttgtattgaatccaccaatcacttgactagcaaaaacaaacacaaataaaaggaaa |
297 |
Q |
| |
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|||||| ||||||||||||| | | ||||||||| |||| | |||||||||||||| |||||||| |||| |||| |
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| T |
1298124 |
ataggttggaggtggtagctctttgttgaatccagcaataagctgactagcaaaaacgaacacaaacaaaatgaaa |
1298049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 1244522 - 1244600
Alignment:
| Q |
351 |
atgaagggcttgcatttttccttccaaatgttaagggtatttataggcatttcatgtccatgatgaaaatattaaaatt |
429 |
Q |
| |
|
|||||| |||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
1244522 |
atgaagagcttgcattttttcttgtaaatgggaagggtatttataggcatttcgagtccatgatgaaaatatcaaaatt |
1244600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 1280560 - 1280638
Alignment:
| Q |
352 |
tgaagggcttgcatttttccttccaaatgttaagggtatttataggcat-ttcatgtccatgatgaaaatattaaaatt |
429 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |||||| |
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|
| T |
1280560 |
tgaagggtttgcattcttccttccaaatgttaagggtatttataggcatcatgaggtccatgataaaaatatcaaaatt |
1280638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 1230087 - 1230160
Alignment:
| Q |
354 |
aagggcttgcatttttccttccaaatgttaagggtatttataggcatttcatgtccatgatgaaaatattaaaatt |
429 |
Q |
| |
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||||||||||||| | | ||||| ||| |||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
1230087 |
aagggcttgcattctacattcca--tgtcaagggtatttataggcattttgtgtccatgatgacaatattcaaatt |
1230160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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