View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_high_16 (Length: 251)
Name: NF21018_high_16
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38792125 - 38792357
Alignment:
| Q |
1 |
ttgtgaaggacgaacttgggtcagtaactcaaccgtgtaagccgggaaaggatcggcgaggnnnnnnnccgggtccaaagcctttagaccgctagcagtt |
100 |
Q |
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| T |
38792125 |
ttgtgaaggacgaacttgggtcagtaactcaaccgtgtaagccgggaaaggatcggcgaggaaaaaaaccgggtccaaagcctttagaccgctagcagtt |
38792224 |
T |
|
| Q |
101 |
gtgccataaaacatgctgacgtgtgtatcaacagcaactggtgttatctcatcacacatttcagaaaacaaagagctaaaccttaataaataaggttctc |
200 |
Q |
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| T |
38792225 |
gtgccataaaacatgctgacgtgtgtatcaacagcaactggtgttatctcatcacacatttcagaaaacaaagagctaaaccttaataaataaggttctc |
38792324 |
T |
|
| Q |
201 |
tacaagtggtcccttctggacacacaactacat |
233 |
Q |
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| T |
38792325 |
tacaagtggtcccttctggacacacaactacat |
38792357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 16147604 - 16147658
Alignment:
| Q |
176 |
ctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaacta |
230 |
Q |
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| T |
16147604 |
ctaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaacta |
16147658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 16195331 - 16195277
Alignment:
| Q |
176 |
ctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaacta |
230 |
Q |
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| T |
16195331 |
ctaaaccttaataaataaggttccctacaagttgttccttcagggcacacaacta |
16195277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 25552900 - 25552961
Alignment:
| Q |
161 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggaca |
222 |
Q |
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|||| |||||||| |||||||||| || ||||||||||||||||| || ||||||||||| |
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| T |
25552900 |
tcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 39975811 - 39975880
Alignment:
| Q |
161 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaacta |
230 |
Q |
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|||| |||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||||| |
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| T |
39975811 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaacta |
39975880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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