View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_high_18 (Length: 250)
Name: NF21018_high_18
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30242416 - 30242655
Alignment:
| Q |
1 |
taactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgttattcc |
100 |
Q |
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| T |
30242416 |
taactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgttattcc |
30242515 |
T |
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| Q |
101 |
tcttattgtgacagaacaaaccaaacatgttaatatgtttagaaatagtatccattcaaaaacaagtctccactttactttaaannnnnnnnnnnngttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
30242516 |
tcttattgtgacagaacaaaccaaacatgttaatatgtttagaaataatatccattcaaaaacaagtctccactttactttaaattttttctttttgttg |
30242615 |
T |
|
| Q |
201 |
cgtgacttcgaatcacgcaaaacctcttcatcctcatcct |
240 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
30242616 |
tgtgacttcgaatcacgcaaaacctcttcgtcctcatcct |
30242655 |
T |
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