View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_high_4 (Length: 518)
Name: NF21018_high_4
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 25469358 - 25469836
Alignment:
| Q |
18 |
aatccatccatcaacttataaatttatgaaagttaccatccaccatacttaaatcagaatagttataatctatgaaccacc-gatgcacacggatatcag |
116 |
Q |
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| T |
25469358 |
aatccatccatcaacttataaatttatgaaagttaccatccaccatacttaaatcagaatagttataatctatgaaccacccgatgcacacggatatcag |
25469457 |
T |
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| Q |
117 |
acacatgctcgaaataataacataattgaattaaacggtcttgaacatcagacacacattcaataagaagtgttggtgctacatagatatagatatagta |
216 |
Q |
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| T |
25469458 |
acacatactcgaaataataacataattgaatttaacggtcttggacatcagacacacattcaataagaagtgttggtgctacatagatatagatatagta |
25469557 |
T |
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| Q |
217 |
tggccaacgcccaaccgccacttacaaaccaaagaaatgatcttcaacaaaagttgataaatatatatacaaaatatttgaannnnnnnaaggaaaaatg |
316 |
Q |
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| T |
25469558 |
tggccaacgcccaaccgccacttacaaaccaaagaaatgatcttcaacaaaagttgataaatatatatacaaaatatttgaattttttgaaggaaaaatg |
25469657 |
T |
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| Q |
317 |
tttgaagttgaatgcacacttgaatgcaaaatcaattttaagtgataaatcacttactatcaacttaattaaaatgataaagttgcagctaatgctctta |
416 |
Q |
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| T |
25469658 |
tttgaag------------ttgaatgcataatcaattttaagtgataaatcacttactatcaacttaattaaaatgataaaattgcagctaatgctctta |
25469745 |
T |
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| Q |
417 |
ttatgtaaaaatgaggatggaccgggaacttaactatccaaagcacgaagcattctcaacatatgcatgaataagctaaaacaaagtctgtg |
508 |
Q |
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| T |
25469746 |
ttatgtaaaaatgaggatggacc-agaacttaactatccaaagcactaagcattctcagcctatgcatgaataagctaaaacaaagtctgtg |
25469836 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 16742952 - 16742993
Alignment:
| Q |
161 |
acatcagacacacattcaataagaagtgttggtgctacatag |
202 |
Q |
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| T |
16742952 |
acatcagacacaccttcgatatgaagtgttggtgctacatag |
16742993 |
T |
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