View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_high_6 (Length: 418)
Name: NF21018_high_6
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 136 - 397
Target Start/End: Complemental strand, 35417458 - 35417197
Alignment:
| Q |
136 |
acctcttatctcatcaccaatgacccacaagacataacaaccattgtctcaaattctaattccaacattgtttctcataactcattagatatgttgaaaa |
235 |
Q |
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| T |
35417458 |
acctcttatctcatcaccaatgacccacaagacataacaaccattgtctcaaattctaattccaacgttgtttctcataactcattagatatgttgaaaa |
35417359 |
T |
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| Q |
236 |
atttgaaggtgtttgtttatgagctaccttcaaaatacaacaatgattggcttgtaaatgggaggtgtaaaacacatttgtttgcttcagaagttgctat |
335 |
Q |
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| T |
35417358 |
atttgaaggtgtttgtttatgagctaccttcaaaatacaacaatgattggcttgtaaatgggaggtgtaaaacacatttgtttgcttcagaagttgctat |
35417259 |
T |
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| Q |
336 |
tcacaccgcattgttgaaaagtgatgtgagaacttttgacccttatgaagctgatttcttct |
397 |
Q |
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| T |
35417258 |
tcacaccgcattgttgaaaagtgatgtgagaacttttgacccttatgaagctgatttcttct |
35417197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 35417575 - 35417519
Alignment:
| Q |
19 |
agaatgaaactcatgaacaaacataacacaaaacctcaacaagaccatcataaaaca |
75 |
Q |
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| T |
35417575 |
agaatgaaactcatgaacaaacataacacaaaacctcaacaagaccatcataaaaca |
35417519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 12172910 - 12172867
Alignment:
| Q |
354 |
aagtgatgtgagaacttttgacccttatgaagctgatttcttct |
397 |
Q |
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| T |
12172910 |
aagtgatgttagaacttttgacccttacgaagctgattttttct |
12172867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 21056021 - 21056114
Alignment:
| Q |
304 |
aaaacacatttgtttgcttcagaagttgctattcacaccgcattgttgaaaagtgatgtgagaacttttgacccttatgaagctgatttcttct |
397 |
Q |
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| T |
21056021 |
aaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttct |
21056114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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