View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21018_high_7 (Length: 391)

Name: NF21018_high_7
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21018_high_7
NF21018_high_7
[»] chr2 (3 HSPs)
chr2 (1-376)||(45245145-45245520)
chr2 (258-376)||(1037724-1037842)
chr2 (240-288)||(44575643-44575691)
[»] chr3 (5 HSPs)
chr3 (178-376)||(51113841-51114039)
chr3 (28-376)||(51120953-51121305)
chr3 (170-376)||(514788-514994)
chr3 (260-372)||(51764504-51764616)
chr3 (261-372)||(13470796-13470907)
[»] chr4 (31 HSPs)
chr4 (243-376)||(546819-546952)
chr4 (258-362)||(53761844-53761947)
chr4 (239-376)||(1524546-1524680)
chr4 (169-376)||(55505168-55505372)
chr4 (242-376)||(553384-553518)
chr4 (169-355)||(8187172-8187358)
chr4 (161-360)||(570175-570374)
chr4 (241-358)||(1537845-1537962)
chr4 (169-362)||(7225957-7226150)
chr4 (170-376)||(640748-640954)
chr4 (180-358)||(1489439-1489617)
chr4 (180-376)||(1513467-1513660)
chr4 (258-376)||(55908788-55908906)
chr4 (243-375)||(370825-370958)
chr4 (234-358)||(8184108-8184232)
chr4 (173-376)||(12121517-12121720)
chr4 (327-376)||(558488-558537)
chr4 (161-206)||(659532-659577)
chr4 (241-376)||(1552827-1552965)
chr4 (240-358)||(1517574-1517692)
chr4 (330-376)||(1548484-1548530)
chr4 (242-358)||(1495997-1496113)
chr4 (208-304)||(1545644-1545740)
chr4 (258-376)||(566110-566228)
chr4 (240-301)||(558401-558462)
chr4 (327-368)||(3438633-3438674)
chr4 (241-305)||(644735-644799)
chr4 (61-132)||(1553051-1553122)
chr4 (170-228)||(1600364-1600422)
chr4 (327-376)||(1508063-1508112)
chr4 (241-293)||(1508146-1508198)
[»] chr6 (25 HSPs)
chr6 (258-376)||(6603262-6603380)
chr6 (239-376)||(6402762-6402899)
chr6 (260-376)||(7119080-7119196)
chr6 (260-376)||(7131558-7131674)
chr6 (258-362)||(19632360-19632464)
chr6 (258-376)||(6585297-6585415)
chr6 (242-375)||(14820598-14820731)
chr6 (260-376)||(6432084-6432200)
chr6 (168-376)||(9411186-9411394)
chr6 (258-372)||(6415887-6416001)
chr6 (263-376)||(6409932-6410045)
chr6 (260-376)||(6594666-6594782)
chr6 (249-372)||(10579800-10579924)
chr6 (261-375)||(14818306-14818420)
chr6 (242-362)||(6394769-6394889)
chr6 (249-373)||(7994245-7994369)
chr6 (260-372)||(6423140-6423252)
chr6 (257-294)||(6589465-6589502)
chr6 (195-283)||(12102164-12102252)
chr6 (242-292)||(28934954-28935004)
chr6 (258-295)||(6426432-6426469)
chr6 (239-303)||(491395-491459)
chr6 (256-288)||(6597040-6597072)
chr6 (327-359)||(11936352-11936384)
chr6 (327-359)||(11948332-11948364)
[»] chr8 (8 HSPs)
chr8 (169-372)||(34936227-34936430)
chr8 (245-376)||(18315333-18315464)
chr8 (246-372)||(44736444-44736570)
chr8 (320-376)||(32151284-32151340)
chr8 (258-360)||(27922429-27922531)
chr8 (78-132)||(18315518-18315572)
chr8 (232-289)||(21235453-21235510)
chr8 (43-115)||(27922208-27922280)
[»] chr1 (5 HSPs)
chr1 (242-376)||(7554393-7554527)
chr1 (240-376)||(9586542-9586678)
chr1 (169-376)||(9580901-9581108)
chr1 (240-306)||(29659026-29659092)
chr1 (240-306)||(29719053-29719119)
[»] scaffold0041 (1 HSPs)
scaffold0041 (244-376)||(39091-39223)
[»] chr7 (4 HSPs)
chr7 (242-372)||(15092215-15092345)
chr7 (258-372)||(10170145-10170259)
chr7 (258-372)||(10177670-10177784)
chr7 (265-372)||(10614521-10614628)
[»] scaffold0295 (1 HSPs)
scaffold0295 (257-376)||(684-803)
[»] chr5 (6 HSPs)
chr5 (243-360)||(32267381-32267498)
chr5 (258-362)||(20478156-20478260)
chr5 (273-376)||(41889614-41889717)
chr5 (265-306)||(17205527-17205568)
chr5 (327-372)||(37937877-37937922)
chr5 (242-306)||(38267686-38267750)
[»] scaffold0014 (1 HSPs)
scaffold0014 (329-376)||(88831-88878)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 45245520 - 45245145
Alignment:
Q  1 gttacatcaagaagtattctaaaagaagtaaattcgaaaacaaaaaacatctcacatttcaaagttcaaacttaagtagagcagtttcagaatgctagca 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  45245520 gttacaacaagaagtattctaaaagaagtaaattcgaaaacaaaaaacatcttacacttcaaagttcaaacttaagtagagcagtttcagaatgctagca 45245421  T
Q  101 aacaaggcatccttggcgcgacaagagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgatggccttgaaaatacc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245420 aacaaggcatccttgacgcgacaagagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgatggccttgaaaatacc 45245321  T
Q  201 atcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45245320 atcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctg 45245221  T
Q  301 tgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245220 tgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 45245145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 1037842 - 1037724
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    ||||||||||||||||| || ||||||||||| || || |||||||| | || ||| |||| ||  || ||||| |||||||||| |||| |||||||||    
T  1037842 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 1037743  T
Q  358 tcacatggagtgtttcatc 376  Q
    ||| || ||||||||||||    
T  1037742 tcatatagagtgtttcatc 1037724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 44575691 - 44575643
Alignment:
Q  240 ctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttca 288  Q
    |||||||||| |||| |  ||||||||||||||||||||||||| ||||    
T  44575691 ctcaaattgagctctctcggttgtgtgcagttttctaccacatgattca 44575643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 376
Target Start/End: Complemental strand, 51114039 - 51113841
Alignment:
Q  178 tcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctac 277  Q
    |||| |||||||||||||||| ||| ||| ||| || |||||||||||||| ||| ||   | | ||||| |||||| | |||| |||||| ||||||||    
T  51114039 tcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctac 51113940  T
Q  278 cacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||||| ||||||||||| ||||||||||| ||||| ||||||| ||| |||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  51113939 cacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatc 51113841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 376
Target Start/End: Complemental strand, 51121305 - 51120953
Alignment:
Q  28 gtaaattcgaaaacaaaaaacatctcacatttcaaa-gttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgg---cgcgaca 123  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||    |||||||  |||||||||||||||||||| || || ||    ||||| |    
T  51121305 gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacaaccatgatgacgcgaaa 51121206  T
Q  124 agagttcccgctcttgttgactgatatgataa-agaactggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcat 222  Q
    ||||||||| ||||   |   ||| ||||||| ||||  ||||||  ||||||| ||||||||| ||||||||| || || ||| ||| || || |||||    
T  51121205 agagttccctctctctatctttgaaatgataagagaaa-ggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcat 51121107  T
Q  223 gcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaa 322  Q
    | |||| | |||| | |||||| |||||| || | | ||||||||||||||||||||||||||||||||| || | ||||||||   ||||  |||  |     
T  51121106 ggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctag 51121007  T
Q  323 taatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
      | | |||||||||||||||||||||||||||||| ||||  ||| |||||||    
T  51121006 agacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatc 51120953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 376
Target Start/End: Complemental strand, 514994 - 514788
Alignment:
Q  170 tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcag 269  Q
    ||||||| |||| |||||||||||||||||||| | | ||| |||||||  |||||||| |   ||    || |||||||||||| | ||| ||||||||    
T  514994 tatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcag 514895  T
Q  270 ttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtg 369  Q
    ||||  |||||||| ||||||||| | ||||||| |   | ||| |||| || ||||||||||||||||||||  |||||||| ||||||||||| ||||    
T  514894 tttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttcgagatcacatgaagtg 514795  T
Q  370 tttcatc 376  Q
     ||||||    
T  514794 cttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 372
Target Start/End: Complemental strand, 51764616 - 51764504
Alignment:
Q  260 ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 359  Q
    ||||||||||||||| |||||||||||||||||||| ||  |||||| || ||| | || || |||||||||||||||||| | |||| |||||||||||    
T  51764616 ttgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatc 51764517  T
Q  360 acatggagtgttt 372  Q
     ||| ||||||||    
T  51764516 gcatagagtgttt 51764504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 372
Target Start/End: Complemental strand, 13470907 - 13470796
Alignment:
Q  261 tgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatca 360  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||| || |||   ||  | |||||||||||||||||||| |||| ||||||||||||    
T  13470907 tgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatca 13470808  T
Q  361 catggagtgttt 372  Q
     || ||||||||    
T  13470807 tatagagtgttt 13470796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 546819 - 546952
Alignment:
Q  243 aaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccac 342  Q
    |||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||| | || |||||||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccac 546918  T
Q  343 gacaactctttgagatcacatggagtgtttcatc 376  Q
     |||||||||||||||||||| ||||||||||||    
T  546919 aacaactctttgagatcacatagagtgtttcatc 546952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 53761947 - 53761844
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    |||||||||||||||||| ||||||||||||||||||| || ||||||| || ||| | ||||| ||||| ||||||||||||||||||| |||| ||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgaga 53761849  T
Q  358 tcaca 362  Q
    |||||    
T  53761848 tcaca 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 1524680 - 1524546
Alignment:
Q  239 cctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagc 338  Q
    ||||||||| |||||| | ||||||||||||||||||| |||||  ||||||||| | |||||||||| | |||   |   |||||| ||||||||||||    
T  1524680 cctcaaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacataacaac---tacgcaataacagttgcaaaagc 1524584  T
Q  339 ccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    ||||||||||||| |||||||| || ||||||||||||    
T  1524583 ccacgacaactctgtgagatcatatagagtgtttcatc 1524546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 376
Target Start/End: Complemental strand, 55505372 - 55505168
Alignment:
Q  169 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 268  Q
    |||||||| |||| |||||||||||||||||||| ||| ||| |||| ||| |||||||| |   ||     |||| ||||||||| | |||||||||||    
T  55505372 ttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 55505273  T
Q  269 gttttctaccacatgtttcactcccttatctgtgacat-gataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggag 367  Q
    |||||||| ||| |||||||||||||| |||||||||| | ||    ||||||||||| |  |||||||| ||||||||| |||||||| ||||||  ||    
T  55505272 gttttctaacacgtgtttcactcccttctctgtgacatcgcta----tttttcaataacaaatgcaaaagtccacgacaattctttgaggtcacataaag 55505177  T
Q  368 tgtttcatc 376  Q
    |||| ||||    
T  55505176 tgttccatc 55505168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 553384 - 553518
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| |  ||| |    ||| || |||||||||||||||    
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagccca 553483  T
Q  342 cgacaactctttgagatcacatggagtgtttcatc 376  Q
      |||||||||||| |||||||  |||| ||||||    
T  553484 gaacaactctttgaaatcacattaagtgcttcatc 553518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 355
Target Start/End: Complemental strand, 8187358 - 8187172
Alignment:
Q  169 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 268  Q
    |||||||| ||| ||||||||||||||||| ||||||| ||| ||||| || |||||| | | ||||| |||||| |||||  ||||| ||||| |||||    
T  8187358 ttatctttctcagcgatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctcagattgacttctgtcagttgcgtgca 8187259  T
Q  269 gttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttga 355  Q
    ||||| ||||||||   ||||||||||  ||||||| | |  ||| |||| || ||| |  ||||||||||||| ||||||||||||    
T  8187258 gttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttga 8187172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 360
Target Start/End: Original strand, 570175 - 570374
Alignment:
Q  161 tggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagt 260  Q
    ||||||| |||||||| |||| ||||| ||||| |||| ||||||| ||| || |||   |||||||| | |||||| | |||||||||||||  | |||    
T  570175 tggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagt 570274  T
Q  261 tgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatca 360  Q
    ||||||||||||||||||||||| ||||| ||  | |  || |||| |||||| |  |  | ||| |||||||||||||| |||||||||||||| ||||    
T  570275 tgtgtgcagttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttgaaatca 570374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 1537962 - 1537845
Alignment:
Q  241 tcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccc 340  Q
    |||||||||||||| | ||||| ||||| ||||||| |||||  ||||||||||| | ||||||| |||||||   || || ||| ||||||||||||||    
T  1537962 tcaaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagccc 1537863  T
Q  341 acgacaactctttgagat 358  Q
    |||||||| |||||||||    
T  1537862 acgacaacactttgagat 1537845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 362
Target Start/End: Complemental strand, 7226150 - 7225957
Alignment:
Q  169 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 268  Q
    |||||||| |||| |||||||||||| | ||||| ||| ||| || || | | ||||||  |  ||||| | |||||||||||||| | |||||  ||||    
T  7226150 ttatctttctcaatgatggccttgaagaaaccattgaggcaacaatatcaccttgcactccacggcagttcttcaaattgatctctctcagttgcttgca 7226051  T
Q  269 gttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 362  Q
    |||||||||||| || |||| |||||| || ||||| | | ||||  ||| || ||||||||||||||| |||| |||||||||||| ||||||    
T  7226050 gttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtccacaacaactctttgatatcaca 7225957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 376
Target Start/End: Original strand, 640748 - 640954
Alignment:
Q  170 tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcag 269  Q
    ||||||| |||| |||||||||||||||||||| ||| |||  |||||||||| ||||| |   ||   | | ||||||| |||| | | || | |||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctcttaattctttgcag 640847  T
Q  270 ttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtg 369  Q
    |||||||||||||| ||||||||||| | ||| |||| || ||| | || || ||| || |||||||| ||||| ||| |||||||| |||| | |||||    
T  640848 ttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtg 640947  T
Q  370 tttcatc 376  Q
    |||||||    
T  640948 tttcatc 640954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 1489617 - 1489439
Alignment:
Q  180 aacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctacca 279  Q
    ||||||||||||||||||| ||  ||| ||| ||||| | |||||||||||   ||     |||||||||||||| | ||||||| ||| ||||||| ||    
T  1489617 aacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttttctagca 1489518  T
Q  280 catgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagat 358  Q
    |||| ||||||||||| |||||||||| | ||||   || || ||| ||||||||||||||||| |||| | |||||||    
T  1489517 catgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagat 1489439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 376
Target Start/End: Complemental strand, 1513660 - 1513467
Alignment:
Q  180 aacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctacca 279  Q
    ||||||||||||||||||| ||  ||| ||| ||||| | ||| ||||| | | || |   |||||||||||||| | ||||||||||| ||||||| ||    
T  1513660 aacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagca 1513561  T
Q  280 catgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    || | ||||||||| | |||||||||  | ||| |||   || ||  |||||||||||||||||||||| ||||||||| || | ||||||||||||    
T  1513560 caagcttcactcccatctctgtgacaatacaaccttt---cagtatgagttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatc 1513467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 55908906 - 55908788
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    ||||||||||||||||| || ||||||||||| || || |||||||| | || ||| |||| ||  || ||||| |||||||||| |||| |||||||||    
T  55908906 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 55908807  T
Q  358 tcacatggagtgtttcatc 376  Q
    ||| || ||||||||||||    
T  55908806 tcatatagagtgtttcatc 55908788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 375
Target Start/End: Original strand, 370825 - 370958
Alignment:
Q  243 aaattgatctctgtaag-ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    |||||||||||| | || ||||||||||||||  |||||||| ||||||||| | | ||||| |   | ||| |||| || ||||||||||||||||| |    
T  370825 aaattgatctctctcaggttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccga 370924  T
Q  342 cgacaactctttgagatcacatggagtgtttcat 375  Q
    | ||||||||||||||||||||| |||| |||||    
T  370925 caacaactctttgagatcacatgaagtgcttcat 370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 8184232 - 8184108
Alignment:
Q  234 cagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtga-catgataacattttttcaataatagttgc 332  Q
    |||| ||||||||||||| || | ||||||||||| ||||||| |||||| |||||||||| |||||||| |||  | ||| |||| || ||| |||| |    
T  8184232 cagttcctcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcat-ttcacaattttccagtaacagttcc 8184134  T
Q  333 aaaagcccacgacaactctttgagat 358  Q
    |||||||||| |||||||||||||||    
T  8184133 aaaagcccacaacaactctttgagat 8184108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 376
Target Start/End: Complemental strand, 12121720 - 12121517
Alignment:
Q  173 ctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttt 272  Q
    |||| |||| |||||||||||||||| ||  ||| ||| ||||| |  |||||||||||  || |   |||||| ||||||| | ||||||||||| |||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttt 12121621  T
Q  273 tctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgttt 372  Q
    ||||||||||| ||||||||| | |||||||||  | | ||   || || | | ||||||||||||||||| |||| ||||||||| ||   ||||||||    
T  12121620 tctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagattacggagagtgttt 12121521  T
Q  373 catc 376  Q
    ||||    
T  12121520 catc 12121517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 558488 - 558537
Alignment:
Q  327 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  558488 agttccaaaagcccacgacaactctttgagatcacatggagtgcttcatc 558537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 659532 - 659577
Alignment:
Q  161 tggaacatttatctttttcaacgatggccttgaaaataccatcgag 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  659532 tggaacaattatctttttcaacgatggccttgaaaataccatcgag 659577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 376
Target Start/End: Complemental strand, 1552965 - 1552827
Alignment:
Q  241 tcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataa---cattttttcaataatagttgcaaaag 337  Q
    |||||||||||||| | |||||   ||| |||||| | ||||| ||||||||||| || ||||||| ||||   |||| ||  | ||| || ||||||||    
T  1552965 tcaaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagctgcaaaag 1552866  T
Q  338 cccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||||||||| ||||||| ||||||| ||||||||||||    
T  1552865 cccacgacaattctttgatatcacattgagtgtttcatc 1552827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 1517692 - 1517574
Alignment:
Q  240 ctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcc 339  Q
    ||||||||||||| |   |||||||  ||||| |||||||||||  | |||||||| |||||||||| || ||| |||| || |||||||| |||||  |    
T  1517692 ctcaaattgatcttttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattc 1517593  T
Q  340 cacgacaactctttgagat 358  Q
    |||||||| ||||||||||    
T  1517592 cacgacaattctttgagat 1517574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 1548530 - 1548484
Alignment:
Q  330 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatc 1548484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 1496113 - 1495997
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    |||||||||||||   |||||||  ||||| |||||||||||  | |||||||| ||||||| || || ||| |||| || |||| |||||||||  |||    
T  1496113 caaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattcca 1496014  T
Q  342 cgacaactctttgagat 358  Q
    |||||| ||||||||||    
T  1496013 cgacaattctttgagat 1495997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 1545644 - 1545740
Alignment:
Q  208 caataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgac 304  Q
    ||||||||||||||||||||| |   ||   ||||||||||||| || | |||||||||||||||| |||| ||| |||||||||||| | ||||||    
T  1545644 caataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttttaccgcatctttcactcccttctatgtgac 1545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 376
Target Start/End: Original strand, 566110 - 566228
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    ||||||||||||||||| ||||  |||||||||||||| ||||| ||||  | |   | || || | | || |||||||||||||||||   ||||||||    
T  566110 agttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatattgcagtgacagctgcaaaagcccacgacagtactttgaga 566209  T
Q  358 tcacatggagtgtttcatc 376  Q
    |||||| ||||||||||||    
T  566210 tcacatagagtgtttcatc 566228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 558401 - 558462
Alignment:
Q  240 ctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgt 301  Q
    ||||||||||| ||| | | ||||||||||||||||| |||||| |||||||| ||||||||    
T  558401 ctcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcactcctttatctgt 558462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 3438674 - 3438633
Alignment:
Q  327 agttgcaaaagcccacgacaactctttgagatcacatggagt 368  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  3438674 agttgcaaaagcccacaacaactctttgagattacatggagt 3438633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 644735 - 644799
Alignment:
Q  241 tcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgaca 305  Q
    |||||| ||||||| | ||||||||||| ||||| ||||||||||||||||| || || ||||||    
T  644735 tcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 1553122 - 1553051
Alignment:
Q  61 aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttggcgcgacaagagttccc 132  Q
    ||||||||||||| || |||| |||||  |||| |||||||||||| ||||||||  |||| ||||||||||    
T  1553122 aaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccc 1553051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 1600364 - 1600422
Alignment:
Q  170 tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcactt 228  Q
    ||||||| |||| ||||||||| ||| |||||||||||||| ||| ||||||| |||||    
T  1600364 tatctttctcaaggatggccttaaaagtaccatcgagacaacaaccttagcattcactt 1600422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 1508112 - 1508063
Alignment:
Q  327 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||||||||||||||||||||| ||||||||| |||   |||||||||||    
T  1508112 agttgcaaaagcccacgacaacactttgagattacacacagtgtttcatc 1508063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 1508198 - 1508146
Alignment:
Q  241 tcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactccc 293  Q
    |||||||||||||| | ||||||||||| ||||||| | |||| |||||||||    
T  1508198 tcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactccc 1508146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 6603380 - 6603262
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||| |||||| | |||||||||||||| |||||||||| |||||||||||||||    
T  6603380 agttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgaga 6603281  T
Q  358 tcacatggagtgtttcatc 376  Q
    || ||| || |||||||||    
T  6603280 tcgcatagactgtttcatc 6603262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 6402762 - 6402899
Alignment:
Q  239 cctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagc 338  Q
    ||||||||  |||||| | |||||||| |||||||||| |||||||||| ||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  6402762 cctcaaataaatctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagc 6402861  T
Q  339 ccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||| |||| ||||||||||||||| ||||||||||||    
T  6402862 ccactacaattctttgagatcacatagagtgtttcatc 6402899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 7119080 - 7119196
Alignment:
Q  260 ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 359  Q
    |||||||||||||||| |||||||||||||| | || | |||||||| |||||| | ||||| |||||||| ||||||||| | |||| |||| ||||||    
T  7119080 ttgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 7119179  T
Q  360 acatggagtgtttcatc 376  Q
    |||||||||||||||||    
T  7119180 acatggagtgtttcatc 7119196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 7131558 - 7131674
Alignment:
Q  260 ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 359  Q
    |||||||||||||||| |||||||||||||| | || | |||||||| |||||| | ||||| |||||||| ||||||||| | |||| |||| ||||||    
T  7131558 ttgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 7131657  T
Q  360 acatggagtgtttcatc 376  Q
    |||||||||||||||||    
T  7131658 acatggagtgtttcatc 7131674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 19632360 - 19632464
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||| || |  ||| ||||||| ||| |||||||||||||||| |||| |||||||||    
T  19632360 agttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgaga 19632459  T
Q  358 tcaca 362  Q
    |||||    
T  19632460 tcaca 19632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 6585415 - 6585297
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    |||||||||||  |||||||||||||||||| |||||| ||||||||||  | |||   ||||| |||||||| ||||||| ||  ||||||||||||||    
T  6585415 agttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 6585316  T
Q  358 tcacatggagtgtttcatc 376  Q
    |||||| ||||||||||||    
T  6585315 tcacatagagtgtttcatc 6585297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 242 - 375
Target Start/End: Original strand, 14820598 - 14820731
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    |||||| |||||| | || ||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||  | ||||| | |||||||||||    
T  14820598 caaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccca 14820697  T
Q  342 cgacaactctttgagatcacatggagtgtttcat 375  Q
    | |||| |||| ||||||| ||  ||||||||||    
T  14820698 caacaattcttggagatcatataaagtgtttcat 14820731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 6432084 - 6432200
Alignment:
Q  260 ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 359  Q
    ||||||||| |||||||||||| ||||||||||||| | |||||||| || ||| || | ||  |||||||||| |||||||| |||| ||||| |||||    
T  6432084 ttgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctttaagatc 6432183  T
Q  360 acatggagtgtttcatc 376  Q
    ||||  |||||||||||    
T  6432184 acataaagtgtttcatc 6432200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 376
Target Start/End: Original strand, 9411186 - 9411394
Alignment:
Q  168 tttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgc 267  Q
    ||||||||  |||| || |||||||||||||||||   | ||| || ||||||||||||| ||   ||  ||| ||||||||||||| | |||||   ||    
T  9411186 tttatcttgctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcactcgatgacaacgccgcaaattgatctctttgagttgcaggc 9411285  T
Q  268 agttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggag 367  Q
    | ||| ||||||||||  |||||||||||||| |||||| || |||   || || ||| ||||||||||| ||||||||| ||||||||||| ||| |||    
T  9411286 aatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagag 9411385  T
Q  368 tgtttcatc 376  Q
    | |||||||    
T  9411386 tatttcatc 9411394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 372
Target Start/End: Original strand, 6415887 - 6416001
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    |||||||||||||| |||||||||||||||||||||   |||||||||| || |||   ||  | |||||||||||||||||| | |||| |||||||||    
T  6415887 agttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 6415986  T
Q  358 tcacatggagtgttt 372  Q
    |||||| ||| ||||    
T  6415987 tcacatagagagttt 6416001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 6409932 - 6410045
Alignment:
Q  263 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 362  Q
    |||||| |||| | ||||||||||||||||||| | |||||||| || ||| || | ||| |||||||||||||||| || |||| ||||||||||||||    
T  6409932 tgtgcatttttttgccacatgtttcactcccttctgtgtgacattatcacagttgtacaaaaatagttgcaaaagccgacaacaattctttgagatcaca 6410031  T
Q  363 tggagtgtttcatc 376  Q
    |  || ||||||||    
T  6410032 taaagagtttcatc 6410045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 376
Target Start/End: Complemental strand, 6594782 - 6594666
Alignment:
Q  260 ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 359  Q
    |||||||||||||||||||||||||||  ||||||  ||||||| ||||| ||| ||||  | |  |||||| |||||||||| |||| |||||||||||    
T  6594782 ttgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattctttgagatc 6594683  T
Q  360 acatggagtgtttcatc 376  Q
    ||| | ||||| |||||    
T  6594682 acacgtagtgtctcatc 6594666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 372
Target Start/End: Complemental strand, 10579924 - 10579800
Alignment:
Q  249 atctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaat-aatagttgcaaaagcccacgacaa 347  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||    | ||| ||||||| | ||||||| |||||||| || ||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaa 10579825  T
Q  348 ctctttgagatcacatggagtgttt 372  Q
     |||||||||||  || ||||||||    
T  10579824 ttctttgagatcgaatagagtgttt 10579800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 14818306 - 14818420
Alignment:
Q  261 tgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatca 360  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||| || ||| ||||  | ||||| | |||||||||||  |||| |||| |||||||    
T  14818306 tgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatca 14818405  T
Q  361 catggagtgtttcat 375  Q
     ||  ||||||||||    
T  14818406 tataaagtgtttcat 14818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 362
Target Start/End: Original strand, 6394769 - 6394889
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    |||||| |||||| | | |||||||||||||||||||||||||| ||| ||||| ||||||||||  | ||| || |  | |  || |||||||||||||    
T  6394769 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagccca 6394868  T
Q  342 cgacaactctttgagatcaca 362  Q
    | |||| ||||||||||||||    
T  6394869 caacaattctttgagatcaca 6394889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 7994369 - 7994245
Alignment:
Q  249 atctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaac 348  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||  || || |||| || |||   ||  | ||||||||||||||| |||  ||||     
T  7994369 atctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaat 7994270  T
Q  349 tctttgagatcacatggagtgtttc 373  Q
    |||||||||||||||  ||||||||    
T  7994269 tctttgagatcacatatagtgtttc 7994245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 372
Target Start/End: Original strand, 6423140 - 6423252
Alignment:
Q  260 ttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 359  Q
    |||||||||||||  ||||||| |||||| ||| || | ||| |||| || ||| | ||  | |||||||||||||| ||||| ||||||||||||||||    
T  6423140 ttgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactctttgagatc 6423239  T
Q  360 acatggagtgttt 372  Q
     ||| ||||||||    
T  6423240 gcatagagtgttt 6423252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 6589502 - 6589465
Alignment:
Q  257 aagttgtgtgcagttttctaccacatgtttcactccct 294  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6589502 aagtcgtgtgcagttttctaccacatgtttcactccct 6589465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 12102164 - 12102252
Alignment:
Q  195 aataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatg 283  Q
    |||| ||||||| ||| |||||||  | |||||| | |||||| | ||| |||| ||||| | ||||||||||||||||||||||||||    
T  12102164 aatatcatcgagtcaacaacattatgaagcactttatagcagttcttcagattgctctctctcagttgtgtgcagttttctaccacatg 12102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 28934954 - 28935004
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcc 292  Q
    ||||| ||||||| | ||||||||||| |||||||||||||| ||||||||    
T  28934954 caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 6426432 - 6426469
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactccctt 295  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6426432 agttgtgtgcagttttctaccacttgtttcacaccctt 6426469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 491395 - 491459
Alignment:
Q  239 cctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtga 303  Q
    |||||||||||||||| | || || ||||||||||||||  ||||  ||||||||||| ||||||    
T  491395 cctcaaattgatctctctcagctgcgtgcagttttctacagcatgcatcactcccttacctgtga 491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 6597072 - 6597040
Alignment:
Q  256 taagttgtgtgcagttttctaccacatgtttca 288  Q
    |||||| ||||||||||||||||||||||||||    
T  6597072 taagttttgtgcagttttctaccacatgtttca 6597040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 11936384 - 11936352
Alignment:
Q  327 agttgcaaaagcccacgacaactctttgagatc 359  Q
    |||||||||||||||| ||||||||||||||||    
T  11936384 agttgcaaaagcccactacaactctttgagatc 11936352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 11948364 - 11948332
Alignment:
Q  327 agttgcaaaagcccacgacaactctttgagatc 359  Q
    |||||||||||||||| ||||||||||||||||    
T  11948364 agttgcaaaagcccactacaactctttgagatc 11948332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 169 - 372
Target Start/End: Complemental strand, 34936430 - 34936227
Alignment:
Q  169 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 268  Q
    |||||||| ||||| |||||||||||  || |||||||  || ||||||||||| ||||| |  ||||| |||||||||||||||  | | |||||||||    
T  34936430 ttatctttctcaacaatggccttgaagttatcatcgaggtaacaacattagcatccactttatggcagttcctcaaattgatctccctcaattgtgtgca 34936331  T
Q  269 gttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagt 368  Q
     ||||| |||||| | |  |||||||| || ||||||| | |||| ||||  | |||||||||||||||||||||||||||||||| |||  ||| ||||    
T  34936330 attttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagt 34936231  T
Q  369 gttt 372  Q
    ||||    
T  34936230 gttt 34936227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 18315464 - 18315333
Alignment:
Q  245 attgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacga 344  Q
    ||||| |||| | |||||||||||||||||||||||||  ||  |||| || |||||||||| | ||||   || |||||| ||||||||||||| ||||    
T  18315464 attgagctctatcagttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacga 18315365  T
Q  345 caactctttgagatcacatggagtgtttcatc 376  Q
    ||||||||||||||||||| ||||| ||||||    
T  18315364 caactctttgagatcacatagagtgcttcatc 18315333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 44736444 - 44736570
Alignment:
Q  246 ttgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgac 345  Q
    ||||||||| | |||||||| || |||||||| |||||||||||||||||   |||||||| |||||| |   ||||||  |||| ||||||||||| ||    
T  44736444 ttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacaac 44736543  T
Q  346 aactctttgagatcacatggagtgttt 372  Q
    |||||||||||||||||  ||||||||    
T  44736544 aactctttgagatcacaatgagtgttt 44736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 32151284 - 32151340
Alignment:
Q  320 caataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  32151284 caataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatc 32151340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 360
Target Start/End: Original strand, 27922429 - 27922531
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    ||||| |||||||||||||||||||| ||||||||||| | ||||| || || ||| ||||  | | | | || ||||||||||| ||||||||||||||    
T  27922429 agttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgaga 27922528  T
Q  358 tca 360  Q
    |||    
T  27922529 tca 27922531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 18315572 - 18315518
Alignment:
Q  78 agagcagtttcagaatgctagcaaacaaggcatccttggcgcgacaagagttccc 132  Q
    |||| ||||| ||||||||||||||||||||||| ||| ||||| ||||||||||    
T  18315572 agagtagtttgagaatgctagcaaacaaggcatctttgacgcgagaagagttccc 18315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 21235453 - 21235510
Alignment:
Q  232 agcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcac 289  Q
    |||||| | |||||||||||||  | |||||||||||||||||||||||||| |||||    
T  21235453 agcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 21235510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 27922208 - 27922280
Alignment:
Q  43 aaaaacatctcacatttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttg 115  Q
    |||||||||| |||||||| || |||||||| || |||  | ||  | |||||||||||||||||||||||||    
T  27922208 aaaaacatcttacatttcagagctcaaacttcagcagaagacttcaacaatgctagcaaacaaggcatccttg 27922280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 7554393 - 7554527
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    |||||| |||||| | ||| | |||||||||||||||||||| ||||||||||| |||||||||| || ||||  ||||| ||| ||||| ||||| |||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcca 7554492  T
Q  342 cgacaactctttgagatcacatggagtgtttcatc 376  Q
    | ||||||||||||||||| || ||||| ||||||    
T  7554493 ccacaactctttgagatcatatagagtgcttcatc 7554527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 9586542 - 9586678
Alignment:
Q  240 ctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcc 339  Q
    ||||||| ||| ||| | || |||||||| |||||||||||| | |||| ||| ||   ||||||||||||||| ||||||  ||| || |||||||| |    
T  9586542 ctcaaatcgatttcttttagatgtgtgcaattttctaccacacgcttcaatccattgcttgtgacatgataacaatttttctgtaaaagatgcaaaagtc 9586641  T
Q  340 cacgacaactctttgagatcacatggagtgtttcatc 376  Q
    |||||||| || ||||| ||||||  |||||||||||    
T  9586642 cacgacaattcattgaggtcacataaagtgtttcatc 9586678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 376
Target Start/End: Original strand, 9580901 - 9581108
Alignment:
Q  169 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 268  Q
    |||||||| ||||||||||||||||| ||||||| ||   ||  ||| ||  |||||||| | | ||   ||||||||  ||||||   |||||||||||    
T  9580901 ttatctttctcaacgatggccttgaagataccattgacgaaaccacactacgatgcactttataacaacccctcaaatcaatctcttccagttgtgtgca 9581000  T
Q  269 gttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagt 368  Q
     |||||||||||| | |||||||| || | |||||||  |||||  | ||||| ||| ||   |||||| ||||||||| |||||||||||||||  ||     
T  9581001 attttctaccacacgcttcactccattgtttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgagatcacataaagc 9581100  T
Q  369 gtttcatc 376  Q
    ||||||||    
T  9581101 gtttcatc 9581108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 29659092 - 29659026
Alignment:
Q  240 ctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacat 306  Q
    |||||||||||||| || ||||| ||||||||||  ||||||||||| ||||| || ||||||||||    
T  29659092 ctcaaattgatctcagtcagttgcgtgcagttttgaaccacatgttttactccattctctgtgacat 29659026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 29719119 - 29719053
Alignment:
Q  240 ctcaaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacat 306  Q
    ||||||||||||||  | |||||  |||||||||  ||||||||||||||||| || ||||||||||    
T  29719119 ctcaaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgacat 29719053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 39091 - 39223
Alignment:
Q  244 aattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacg 343  Q
    |||| |||||| | ||||| |||||||| | |||||||||||||||||||||   ||||||| || ||||||||| || ||  || |||||||||||||     
T  39091 aattaatctctctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccact 39190  T
Q  344 acaactctttgagatcacatggagtgtttcatc 376  Q
    ||||||||||||||||||||  |||||||||||    
T  39191 acaactctttgagatcacataaagtgtttcatc 39223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 372
Target Start/End: Complemental strand, 15092345 - 15092215
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 341  Q
    |||||| |||||| | | ||||||||||||||||| ||||||||||||||||   |||||||||| ||||||   ||  | |||||||||||||||||||    
T  15092345 caaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagccca 15092246  T
Q  342 cgacaactctttgagatcacatggagtgttt 372  Q
    | |||| ||||||||||| ||| ||||||||    
T  15092245 caacaattctttgagatcgcatagagtgttt 15092215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 10170259 - 10170145
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    ||||||| ||||||||||  ||||||||||||||| || |||||||||| || ||| || ||||  ||||||| |||||| |||| ||||  ||||||||    
T  10170259 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttgaga 10170160  T
Q  358 tcacatggagtgttt 372  Q
    |||||| ||||||||    
T  10170159 tcacatagagtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 10177784 - 10177670
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    ||||||| ||||||||||  ||||||||||||||| || |||||||||| || ||| || ||||  ||||||| |||||| |||| ||||  ||||||||    
T  10177784 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttgaga 10177685  T
Q  358 tcacatggagtgttt 372  Q
    |||||| ||||||||    
T  10177684 tcacatagagtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 10614521 - 10614628
Alignment:
Q  265 tgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatg 364  Q
    |||||||||||||||||||||||||||| |  |||||||||| || | |   ||  | |||||||||||||||||||| |||  |||| ||||||||||     
T  10614521 tgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttcgagatcacata 10614620  T
Q  365 gagtgttt 372  Q
    ||||||||    
T  10614621 gagtgttt 10614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 803 - 684
Alignment:
Q  257 aagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgag 356  Q
    ||||||||||||||||||||| ||||||||||| || || ||| |||| | || ||| |||| || ||| ||||| || ||||||| |||| |||| |||    
T  803 aagttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgag 704  T
Q  357 atcacatggagtgtttcatc 376  Q
    |||| || ||||||||||||    
T  703 atcatatagagtgtttcatc 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 32267381 - 32267498
Alignment:
Q  243 aaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccac 342  Q
    ||||| |||| | ||||||| |||||||||||||| ||||| ||||||||||| | ||||| || || ||| ||||| | | | | || |||||||||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  343 gacaactctttgagatca 360  Q
     |||||||||||||||||    
T  32267481 aacaactctttgagatca 32267498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 20478260 - 20478156
Alignment:
Q  258 agttgtgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 357  Q
    |||||||||||||||||||| ||||||||| |||| ||   |||||||| ||  || ||||||| || || |||||||||||||| |||| || ||||||    
T  20478260 agttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattccttgaga 20478161  T
Q  358 tcaca 362  Q
    |||||    
T  20478160 tcaca 20478156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 376
Target Start/End: Complemental strand, 41889717 - 41889614
Alignment:
Q  273 tctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgttt 372  Q
    ||||||||||| ||||||||||| | |||||||| |||||| ||||| | ||| | || | ||||||| | ||||||||||||||||  ||  |||||||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  373 catc 376  Q
    ||||    
T  41889617 catc 41889614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 17205527 - 17205568
Alignment:
Q  265 tgcagttttctaccacatgtttcactcccttatctgtgacat 306  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacat 17205568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 37937877 - 37937922
Alignment:
Q  327 agttgcaaaagcccacgacaactctttgagatcacatggagtgttt 372  Q
    ||||||||||||||||||||  |||||||||| |||| ||||||||    
T  37937877 agttgcaaaagcccacgacacatctttgagattacatagagtgttt 37937922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 38267750 - 38267686
Alignment:
Q  242 caaattgatctctgtaagttgtgtgcagttttctaccacatgtttcactcccttatctgtgacat 306  Q
    ||||||||||||| | |||| |||||||||||  ||||||||  |||||||||| || |||||||    
T  38267750 caaattgatctctctgagttttgtgcagtttttgaccacatgcatcactcccttctcggtgacat 38267686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 88831 - 88878
Alignment:
Q  329 ttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 376  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  88831 ttgcaaaagcccatgacacctctttgagatcacatggagtgcttcatc 88878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University