View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21018_high_8 (Length: 384)
Name: NF21018_high_8
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 1378086 - 1377881
Alignment:
| Q |
13 |
aatataattaattaatgttagttaagccatggtcacgtatacgcacaatagatgctttataggatgtacgtgtgtcttaggataatactgttaagatgga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1378086 |
aatataattaattaatgttagttaagccatgatcacgtatacgcacaatagatgctttataggatgtacgtgtgtcttaggataatattgttaagatgga |
1377987 |
T |
|
| Q |
113 |
aattaaaagaaactatatacacataaaaaatgataataatccaaagttgtactcctcttctaagccactcctagcactacaatgtcaagatgaaatgttg |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1377986 |
aattaaaagaaactat----acataaaaaataataataatcaaaagttgtaatcctcttctaagccactcctagcactacaatgtcaagatgaaatgttg |
1377891 |
T |
|
| Q |
213 |
gcaaccttta |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
1377890 |
gcaaccttta |
1377881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 1377850 - 1377763
Alignment:
| Q |
223 |
gaacaaactgacccacaccacacaaaccgcaaattccactacttacaattaggggcgaatctggactcacaatgttggtgagacacaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
1377850 |
gaacaaactgacccacaccacacaaactgcaaattccactacttacaatcagaggcggatctggactcacaatgttggtgagacacaa |
1377763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University