View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_low_1 (Length: 644)
Name: NF21018_low_1
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Complemental strand, 42030653 - 42030035
Alignment:
| Q |
18 |
aaaatttcagtaaaacaagtcaagaacaaagaaaacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgcc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030653 |
aaaatttcagcaaaacaagtcaagaacaaagaaaacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgcc |
42030554 |
T |
|
| Q |
118 |
aactgcaacttgctgaacaaaaggcatgaggttgttgggaattccgcgaggatcctcaccaatatgaccactaggatgtgcaccaacggggttgaagtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42030553 |
aactgcaacttgctgaacaaaaggcatgaggttgttgggaattccgcgaggatcctcaccaatatgaccactgggatgtgcaccaacggggttgaagtat |
42030454 |
T |
|
| Q |
218 |
ctcaacagtgttattttccatcctggatcagaacggtagatatcacgacaaatttcttcaatgtatagctnnnnnnnnnnnnnnnnnnnctctcattaga |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42030453 |
ctcaacagtgttattttccatcctggatcagaacggtagatatcacgacaaatttcttcaatgtatagctgaaagaaaaagaaaaagaactctcattaga |
42030354 |
T |
|
| Q |
318 |
ttctgataggatacatctgtaatctgtaatatacaaccaaaatataaacaagattgcaaagggaactcttgtttagctatccctaccaaagtatccgata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030353 |
ttctgataggatacatctgtaatctgtaatatacaaccaaaatataaacaagattgcaaagggaactcttgtttagctatccctaccaaagtatccgata |
42030254 |
T |
|
| Q |
418 |
agcaccctaaatagttctttagccataccttggttcgtccatatgggcttgcagctgataaaggaaactcttcagtgcaggggacctcctttggccaacc |
517 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030253 |
agtaccctaaatagttctttagtcataccttggttcgtccatatgggcttgcagccgataaaggaaactcttcagtgcaggggacctcctttggccaacc |
42030154 |
T |
|
| Q |
518 |
atatacagtggctgaagaggagaacacaagctgaaatcaatcaagaaatacagaatcaggttcagtaacaaaattgcaacaaccaatctcacaagacact |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030153 |
gtatacagtggctgaagaggagaacacaagctgaaatcaatcaagaaatacagaatcaggttcagtaacaaaattgcaacaaccaatctcacaagacact |
42030054 |
T |
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| Q |
618 |
ttaaggtagcagtattatc |
636 |
Q |
| |
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||||||||||||||||||| |
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| T |
42030053 |
ttaaggtagcagtattatc |
42030035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 441 - 561
Target Start/End: Original strand, 2132152 - 2132272
Alignment:
| Q |
441 |
cataccttggttcgtccatatgggcttgcagctgataaaggaaactcttcagtgcaggggacctcctttggccaaccatatacagtggctgaagaggaga |
540 |
Q |
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|||||||||||||||||||||||| |||| ||||| | ||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2132152 |
cataccttggttcgtccatatgggtttgctgctgacagaggaaactcttcagtacatggaacctcctttggccaaccatatacagtggctgaagatgaga |
2132251 |
T |
|
| Q |
541 |
acacaagctgaaatcaatcaa |
561 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
2132252 |
acacaagctgaaatcattcaa |
2132272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 51 - 280
Target Start/End: Original strand, 2131675 - 2131904
Alignment:
| Q |
51 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
150 |
Q |
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||||||| ||||| |||||| ||| ||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||| ||| ||||| || || |
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| T |
2131675 |
aacataccccagtaccatcaactgttttataatcatttccaaaaactgtcagtgcaggacgtctgccaaccgctacttgctgaataaatggcataagatt |
2131774 |
T |
|
| Q |
151 |
gttgggaattccgcgaggatcctcaccaatatgaccactaggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
250 |
Q |
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|| ||||| ||| |||||||||| ||||||| ||||||||| |||||||| || ||||||||||||||||| | |||||||||| ||||||||| | |
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| T |
2131775 |
atttggaatcccgtgaggatcctccccaatataaccactagggtgtgcacccactgggttgaagtatctcaataacattattttccaatctggatcagca |
2131874 |
T |
|
| Q |
251 |
cggtagatatcacgacaaatttcttcaatg |
280 |
Q |
| |
|
|| | || ||||||||| |||||||||||| |
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| T |
2131875 |
cgattgacatcacgacagatttcttcaatg |
2131904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 51 - 279
Target Start/End: Original strand, 2127216 - 2127444
Alignment:
| Q |
51 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
150 |
Q |
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||||||| ||||| |||||| ||| ||||||| ||||||||| ||||| ||||| ||||||||||| || |||||||||| || |||||||| || |
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| T |
2127216 |
aacataccccagtaccatcaactgtattataatcatttccaaaaattgtcagtgcaggccgtctgccaaccgctacttgctgaatgaatggcatgagatt |
2127315 |
T |
|
| Q |
151 |
gttgggaattccgcgaggatcctcaccaatatgaccactaggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
250 |
Q |
| |
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||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| || ||||| || |||||| | | | |||||||||| |||| |||| | |
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| T |
2127316 |
gtttggaactccacgaggatcctctccaatataaccactagggtgtgcacccactgggttaaaatatctcgataatattattttccagtctggctcagca |
2127415 |
T |
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| Q |
251 |
cggtagatatcacgacaaatttcttcaat |
279 |
Q |
| |
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|| | | ||||||||||||||||||||| |
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| T |
2127416 |
cgatgaacatcacgacaaatttcttcaat |
2127444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 2127581 - 2127691
Alignment:
| Q |
441 |
cataccttggttcgtccatatgggcttgcagctgataaaggaaactcttcagtgcaggggacctcctttggccaaccatatacagtggctgaagaggaga |
540 |
Q |
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||||||||||| ||||| |||||| |||| ||||| | |||||||||||| || || || ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2127581 |
cataccttggtacgtccgtatgggtttgctgctgacagaggaaactcttctgtacatggaacctcctttggccaaccatatacagtggccgaagatgaga |
2127680 |
T |
|
| Q |
541 |
acacaagctga |
551 |
Q |
| |
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||||||||||| |
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| T |
2127681 |
acacaagctga |
2127691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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