View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21018_low_10 (Length: 316)
Name: NF21018_low_10
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_10 |
 | |
|
| [»] scaffold0011 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0011 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 205104 - 205395
Alignment:
| Q |
11 |
cataggcttgatcctgttctttcacgtctgtatacccttcactatcttgtcctgtttcctcttcacattctttcatctgatggccaatcctcccatattt |
110 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
205104 |
cataagcttgatcctgttcttccacttctgtatacccttcactatcttgtcccgtttcctcttcacattctttcatctgatggctaatcctcccacattt |
205203 |
T |
|
| Q |
111 |
gtagcagaagttgggtagtctttcgtacttgaagaaaatccataggtttcttttctagtatttcaggacagtacctcgcttcaaagggttcctcagatct |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
205204 |
gtagcagaagttgggtagtcttccgtacttgaagaaaatccataggtttcttttctggtatttcagcacagtacctcgcttcaaagggttccttagatct |
205303 |
T |
|
| Q |
211 |
atcgtcactttgattcgatagttggatagcaatatattttcaatgcgaagaaaaactagtattttggatcacgttttatggttggaaggaga |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
205304 |
atcgccactttgattcgatagttggatagcaatatattttcaatgcgaagaaaaactagtattttggatcacgttctatggttggaaggaga |
205395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 211181 - 211472
Alignment:
| Q |
11 |
cataggcttgatcctgttctttcacgtctgtatacccttcactatcttgtcctgtttcctcttcacattctttcatctgatggccaatcctcccatattt |
110 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
211181 |
cataagcttgatcctgttcttccacttctgtatacccttcactatcttgtcccgtttcctcttcacattctttcatctgatggctaatcctcccacattt |
211280 |
T |
|
| Q |
111 |
gtagcagaagttgggtagtctttcgtacttgaagaaaatccataggtttcttttctagtatttcaggacagtacctcgcttcaaagggttcctcagatct |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
211281 |
gtagcagaagttgggtagtcttccgtacttgaagaaaatccataggtttcttttctggtatttcagcacagtacctcgcttcaaagggttccttagatct |
211380 |
T |
|
| Q |
211 |
atcgtcactttgattcgatagttggatagcaatatattttcaatgcgaagaaaaactagtattttggatcacgttttatggttggaaggaga |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
211381 |
atcgccactttgattcgatagttggatagcaatatattttcaatgcgaagaaaaactagtattttggatcacgttctatggttggaaggaga |
211472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 224634 - 224702
Alignment:
| Q |
234 |
ggatagcaatatattttcaatgcgaagaaaaactagtattttggatcacgttttatggttggaaggaga |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224634 |
ggatagcaatatattttcaatgcgaagaaaaactagtattttggatcacgttttatggttggaaggaga |
224702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 8371627 - 8371844
Alignment:
| Q |
11 |
cataggcttgatcctgttctttcacgtctgtatacccttcactatcttgtcctgtttcctcttcacattctttcatctgatggccaatcctcccatattt |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
8371627 |
cataggcttgatcctgttcttccacgtctgtatacccttcactatcttgtcccgtttcctcttcacattccttcatctgatggccaatcctcccacattt |
8371726 |
T |
|
| Q |
111 |
gtagcagaagttgggtagtctttcgtacttgaagaaaatccataggtttcttttctagtatttcaggacagtacctcgcttcaaagggttcctcagatct |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8371727 |
gtagcagaagttgggtaatctttcgtacttgaaaaaaattcataggtttcttttctggtatttcagcacagtacctcgcttcaaagggttcctcagatct |
8371826 |
T |
|
| Q |
211 |
atcgtcactttgattcga |
228 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
8371827 |
atcgccactttgattcga |
8371844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 34496030 - 34495852
Alignment:
| Q |
34 |
acgtctgtatacccttcactatcttgtcctgtttcctcttcacattctttcatctgatggccaatcctcccatatttgtagcagaagttgggtagtcttt |
133 |
Q |
| |
|
|||||||| || ||||||| ||||||||| |||||||| |||||||| |||||||| ||||||||||||||| |||| |||||||| ||||| || | | |
|
|
| T |
34496030 |
acgtctgtgtatccttcaccatcttgtcccgtttcctcctcacattccttcatctggtggccaatcctcccacatttatagcagaaattgggaagacgct |
34495931 |
T |
|
| Q |
134 |
cgtacttgaagaaaatccataggtttcttttctagtatttcaggacagtacctcgcttcaaagggttcctcagatctat |
212 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| | ||| |||| ||| | |||||||||| |||||||||||||||||| |
|
|
| T |
34495930 |
cgtacttgaagaaaatccagaggcttcttttttggtacttcaacacaatccctcgcttcagagggttcctcagatctat |
34495852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University