View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_low_12 (Length: 294)
Name: NF21018_low_12
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 6255584 - 6255315
Alignment:
| Q |
10 |
aatgagaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagagtaatgtt |
109 |
Q |
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| T |
6255584 |
aatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagaggaatgtt |
6255485 |
T |
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| Q |
110 |
ccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatagctgtacggaaaggagaaccatcggtga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6255484 |
ccttttaacaagaagaaaatgtatgctccattcacgcagttcatgctaacatgagaacttacggagtcaatagctgtacggaaaggagaaccatcagtga |
6255385 |
T |
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| Q |
210 |
caagagtgtatataaaggttccaagcattggtacacccaaaatgctgaaaaggattcttaaagtcgcaac |
279 |
Q |
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| T |
6255384 |
caagagtgtatataaaggttccaagcataacaacacccaaaatgctgaaaaggattcttaaagtcgcaac |
6255315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 43430659 - 43430928
Alignment:
| Q |
10 |
aatgagaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagagtaatgtt |
109 |
Q |
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| T |
43430659 |
aatgaaaagcacttaataaatcacaactttcaaattcaatattgaccacaccacaatctatgtctactaaaagaagta--tataatgggagaggaatgtt |
43430756 |
T |
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| Q |
110 |
ccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatag--ctgtacggaaaggagaaccatcggt |
207 |
Q |
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| T |
43430757 |
ccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttatatgagcacttacgaagtcaatagctctgtacggaaaggagaaccatcagt |
43430856 |
T |
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| Q |
208 |
gacaagagtgtatataaaggttccaagcattggtacacccaaaatgctgaaaaggattcttaaagtcgcaac |
279 |
Q |
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| T |
43430857 |
gacaagaatgtatattaaagttccaagcataacaacacccaaaatgctgaaaaggatttttaaagtcgcaac |
43430928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 51208233 - 51208492
Alignment:
| Q |
10 |
aatgagaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagtacatataatgggagagtaatgtt |
109 |
Q |
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| T |
51208233 |
aatgaaaagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatgtctactaaaagaagta--tataatgggagaggaatgtt |
51208330 |
T |
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| Q |
110 |
ccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatagctgtacggaaaggagaaccatcggtga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
51208331 |
ccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttatatgagcacttacggagtcaatagctgtacggaaaggagaaccatcag--- |
51208427 |
T |
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| Q |
210 |
caagagtgtatataaaggttccaagcattggtacacccaaaatgctgaaaaggattcttaaagtcgcaac |
279 |
Q |
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| T |
51208428 |
-----gtgtatatcaaggttccaagcataacaacacccaaaatgctgaaaaggattcttaaagtcgcaac |
51208492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 279
Target Start/End: Complemental strand, 43956065 - 43955878
Alignment:
| Q |
94 |
atgggagagtaatgttccttttaacaagaagaaaatgtatgctccattcacgcagttcatgcttacatgagaacttacggagtcaatag--ctgtacgga |
191 |
Q |
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||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
43956065 |
atgggagaggaatattccttttaacaagaagaaaatgtattctccatttacgcagttcatgcttatatgagcacttacggagtcaatagctctgtacgga |
43955966 |
T |
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| Q |
192 |
aaggagaaccatcggtgacaagagtgtatataaaggttccaagcattggtacacccaaaatgctgaaaaggattcttaaagtcgcaac |
279 |
Q |
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| T |
43955965 |
aaggagaaccatcagtgacaagagtgtataccaaggttccaagcatgacaacacccaaaatgccgaaaaggattcttagagtcgcaac |
43955878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 43962374 - 43962281
Alignment:
| Q |
186 |
tacggaaaggagaaccatcggtgacaagagtgtatataaaggttccaagcattggtacacccaaaatgctgaaaaggattcttaaagtcgcaac |
279 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||| |||| |||| |
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| T |
43962374 |
tacggaaaggagaaccatcggtgacaagcgtgtaccctaaggttccaagcatgacagcacccaaaatgctgaaaagtattcttagagtcacaac |
43962281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 43956296 - 43956241
Alignment:
| Q |
16 |
aagcacttaataaatcacaactttcaaattcaatattgtccacaccacaatctatg |
71 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
43956296 |
aagcactttataaatcacaactttcaaaatcaatgttgtccacactgcaatctatg |
43956241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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