View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_low_13 (Length: 274)
Name: NF21018_low_13
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 38791860 - 38792072
Alignment:
| Q |
61 |
tgaacattattttctctaggtccacgaaagtaaccctttcattttcatttcggtcacatctaataataagttggttattgttgactgttgcgtggtatgc |
160 |
Q |
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| T |
38791860 |
tgaacattattttctctaggtccacgaaagtaaccctttcattttcatttcg-tcacatctaataataagttggttattgttgactgttgcgtggtatgc |
38791958 |
T |
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| Q |
161 |
tgttccttcggttgaaaactaccccttcattaccagctagcatcaaatacttatcttttcttgtaagctttgtacactcaaatcccaaagtgttaccgat |
260 |
Q |
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| T |
38791959 |
tgttccttcggttgaaaactaccccttcattaccagctagcatcaaatacttatcttttcttgtaagctttgtacactcaaatcccaaagtgttaccgat |
38792058 |
T |
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| Q |
261 |
ctccgcttgaatat |
274 |
Q |
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| T |
38792059 |
ctccgcttgaatat |
38792072 |
T |
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