View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21018_low_2 (Length: 564)

Name: NF21018_low_2
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21018_low_2
NF21018_low_2
[»] chr8 (23 HSPs)
chr8 (19-309)||(41806110-41806399)
chr8 (309-560)||(30410235-30410486)
chr8 (309-560)||(28644562-28644813)
chr8 (308-560)||(30405726-30405961)
chr8 (309-504)||(33071918-33072113)
chr8 (309-504)||(42234656-42234851)
chr8 (309-504)||(38757003-38757186)
chr8 (24-260)||(41800036-41800270)
chr8 (308-462)||(43807485-43807641)
chr8 (309-462)||(43812044-43812199)
chr8 (307-462)||(202202-202361)
chr8 (307-462)||(317039-317198)
chr8 (308-462)||(197684-197842)
chr8 (308-462)||(312521-312679)
chr8 (309-405)||(41945339-41945434)
chr8 (308-409)||(41949801-41949902)
chr8 (433-487)||(27435169-27435223)
chr8 (512-560)||(197591-197639)
chr8 (512-560)||(202109-202157)
chr8 (512-560)||(312428-312476)
chr8 (512-560)||(316946-316994)
chr8 (530-560)||(43807391-43807421)
chr8 (530-560)||(43811950-43811980)
[»] chr5 (27 HSPs)
chr5 (309-560)||(30695293-30695545)
chr5 (309-504)||(32485947-32486143)
chr5 (308-560)||(40367517-40367758)
chr5 (309-560)||(40371655-40371892)
chr5 (309-504)||(19502307-19502504)
chr5 (308-504)||(26336767-26336965)
chr5 (309-504)||(36632314-36632497)
chr5 (329-494)||(43384972-43385138)
chr5 (308-462)||(7099374-7099532)
chr5 (308-462)||(12023288-12023446)
chr5 (309-462)||(7103943-7104100)
chr5 (309-462)||(12018731-12018888)
chr5 (308-462)||(16798668-16798826)
chr5 (309-462)||(16794108-16794265)
chr5 (357-490)||(20830304-20830437)
chr5 (309-462)||(10274546-10274698)
chr5 (303-417)||(10277198-10277312)
chr5 (308-560)||(37682035-37682277)
chr5 (309-560)||(37658732-37658973)
chr5 (162-309)||(278541-278689)
chr5 (357-431)||(20808675-20808749)
chr5 (24-140)||(278393-278511)
chr5 (511-560)||(16794310-16794360)
chr5 (511-560)||(16798871-16798921)
chr5 (511-560)||(7099280-7099329)
chr5 (511-560)||(7103849-7103898)
chr5 (433-465)||(5733082-5733114)
[»] chr7 (13 HSPs)
chr7 (308-560)||(27761396-27761649)
chr7 (309-560)||(27756846-27757098)
chr7 (315-560)||(47419483-47419729)
chr7 (309-560)||(22901154-22901407)
chr7 (308-490)||(35705633-35705815)
chr7 (309-504)||(7466485-7466669)
chr7 (322-498)||(733634-733811)
chr7 (308-462)||(7940083-7940241)
chr7 (309-462)||(7944636-7944793)
chr7 (321-481)||(13828087-13828248)
chr7 (508-560)||(7939989-7940041)
chr7 (508-560)||(7944542-7944594)
chr7 (321-417)||(37355573-37355669)
[»] chr3 (18 HSPs)
chr3 (308-560)||(21847108-21847362)
chr3 (308-560)||(21850198-21850452)
chr3 (309-504)||(9105275-9105470)
chr3 (309-504)||(11004365-11004560)
chr3 (308-504)||(43547722-43547920)
chr3 (309-504)||(9697586-9697783)
chr3 (308-462)||(54171924-54172082)
chr3 (308-462)||(54167344-54167502)
chr3 (309-462)||(39399127-39399279)
chr3 (385-505)||(43554645-43554765)
chr3 (39-263)||(24685238-24685444)
chr3 (63-258)||(24631841-24632035)
chr3 (370-490)||(755891-756012)
chr3 (308-386)||(43554291-43554371)
chr3 (166-241)||(24682519-24682594)
chr3 (113-275)||(24653501-24653664)
chr3 (357-462)||(38175790-38175894)
chr3 (379-412)||(755824-755857)
[»] chr1 (7 HSPs)
chr1 (309-549)||(39793831-39794070)
chr1 (309-560)||(16588383-16588635)
chr1 (308-560)||(26316012-26316251)
chr1 (309-560)||(26311522-26311760)
chr1 (308-504)||(43591783-43591979)
chr1 (308-462)||(10504435-10504588)
chr1 (433-465)||(41879945-41879977)
[»] chr6 (13 HSPs)
chr6 (308-560)||(27552014-27552268)
chr6 (309-549)||(8319960-8320199)
chr6 (308-549)||(8315421-8315662)
chr6 (309-550)||(17779914-17780156)
chr6 (309-504)||(17096236-17096431)
chr6 (307-560)||(27574643-27574886)
chr6 (309-498)||(17895691-17895881)
chr6 (309-504)||(14531749-14531945)
chr6 (308-498)||(17886816-17887001)
chr6 (347-462)||(6440865-6440979)
chr6 (370-411)||(17163689-17163730)
chr6 (374-412)||(7888212-7888250)
chr6 (322-411)||(17159610-17159700)
[»] chr4 (19 HSPs)
chr4 (308-560)||(31670089-31670341)
chr4 (308-504)||(53722006-53722202)
chr4 (309-504)||(10317025-10317220)
chr4 (308-504)||(8892582-8892779)
chr4 (309-504)||(27186142-27186341)
chr4 (302-504)||(43683636-43683826)
chr4 (308-560)||(44151557-44151808)
chr4 (309-462)||(3770842-3770999)
chr4 (309-560)||(44147023-44147273)
chr4 (308-504)||(50627904-50628088)
chr4 (309-462)||(41884925-41885076)
chr4 (405-504)||(35842843-35842942)
chr4 (308-462)||(31359150-31359303)
chr4 (307-462)||(49274517-49274670)
chr4 (309-404)||(31354678-31354772)
chr4 (343-503)||(53785880-53786039)
chr4 (360-412)||(45976222-45976274)
chr4 (336-386)||(35842797-35842847)
chr4 (512-560)||(3771044-3771093)
[»] chr2 (14 HSPs)
chr2 (308-560)||(8055391-8055643)
chr2 (309-560)||(8050839-8051090)
chr2 (309-558)||(6463345-6463583)
chr2 (309-504)||(12999426-12999622)
chr2 (308-462)||(36670502-36670660)
chr2 (308-462)||(36675050-36675208)
chr2 (309-471)||(13270980-13271131)
chr2 (308-462)||(35950443-35950596)
chr2 (309-462)||(41093824-41093976)
chr2 (322-409)||(29767953-29768041)
chr2 (374-462)||(34590280-34590366)
chr2 (507-560)||(36670701-36670755)
chr2 (507-560)||(36675249-36675303)
chr2 (363-400)||(27403696-27403733)
[»] scaffold0044 (2 HSPs)
scaffold0044 (308-560)||(44771-45023)
scaffold0044 (309-560)||(49351-49602)
[»] scaffold0440 (3 HSPs)
scaffold0440 (308-462)||(2979-3137)
scaffold0440 (308-462)||(7505-7662)
scaffold0440 (508-560)||(7704-7757)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 41806399 - 41806110
Alignment:
Q  19 ctctcttctgaaccagaagagataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806399 ctctcttctgaaccagaagagataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatctt 41806300  T
Q  119 ctaaatatttcacttactactgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctcc 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806299 ctaaatatttcacttactactgtttttttctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctcc 41806200  T
Q  219 ttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaatgtaagatgggcttctatatgctctgaagagaat 309  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  41806199 ttgttatttgattttataggtcccgcggaacaaga-gaatgttaactgtagaaagaatgtaagacgggcttctataagcactgaagagaat 41806110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 309 - 560
Target Start/End: Complemental strand, 30410486 - 30410235
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30410287  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  30410286 tgtagaatcaataaagatcaattacaatttcatcataactttcttctctctc 30410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 28644562 - 28644813
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgca 28644761  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||||||| |||||   ||||||||||||||||||||| |||||||||||||    
T  28644762 tgtagaatcaataagaatcaattacaatttcatcataattttcttctctctc 28644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 308 - 560
Target Start/End: Complemental strand, 30405961 - 30405726
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||                 ||||||||||||||||||||||||||||||||||||    
T  30405961 atgttagtttgttttaattcaagtttagtttagtgataatcacattc-----------------tgttttagtttgttatgaagtttgttacaagtttgt 30405879  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 507  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  30405878 tagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttat 30405779  T
Q  508 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  30405778 atgtagaatcaataaagatcaattacaatttcatcataactttcttctctctc 30405726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
     |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 38757003 - 38757186
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 41800270 - 41800036
Alignment:
Q  24 ttctgaaccagaaga-gataaaacaagcagcacagaaaagtcaggaaaaa-gatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttcta 121  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||||||| ||||||||| ||  || ||||| || ||||||||||||| |||||||||    
T  41800270 ttctgaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttcta 41800171  T
Q  122 aatatttcacttactactgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttg 221  Q
    |||||    |||||| ||||||||   |||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  41800170 aatat----cttacttctgttttttattctccaaagtgatgtgcatttccttttcctgcacagtttatggtttgtgtttgattttgttagattctcctgg 41800075  T
Q  222 ttatttgattttataggtcccgcggaacaagaggaatgt 260  Q
    ||||||||||||||||||||||  ||||||| |||||||    
T  41800074 ttatttgattttataggtcccgaagaacaaggggaatgt 41800036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 43807641 - 43807485
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43807641 atgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 43807542  T
Q  408 tagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807541 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 309 - 462
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  409 agaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 307 - 462
Target Start/End: Complemental strand, 202361 - 202202
Alignment:
Q  307 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 404  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  202361 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 202262  T
Q  405 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  202261 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 307 - 462
Target Start/End: Complemental strand, 317198 - 317039
Alignment:
Q  307 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 404  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  317198 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 317099  T
Q  405 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  317098 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 197842 - 197684
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  197842 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 197743  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  197742 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 312679 - 312521
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  312679 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 312580  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  312579 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 309 - 405
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 308 - 409
Target Start/End: Original strand, 41949801 - 41949902
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||||||| ||    
T  41949801 atgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggt 41949900  T
Q  408 ta 409  Q
    ||    
T  41949901 ta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 487
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  433 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagcta 487  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 197639 - 197591
Alignment:
Q  512 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  197639 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 202157 - 202109
Alignment:
Q  512 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  202157 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 202109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 312476 - 312428
Alignment:
Q  512 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  312476 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 316994 - 316946
Alignment:
Q  512 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  316994 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 560
Target Start/End: Complemental strand, 43807421 - 43807391
Alignment:
Q  530 ttacaatttcatcataactttcttctctctc 560  Q
    |||||||||||||||||||||||||||||||    
T  43807421 ttacaatttcatcataactttcttctctctc 43807391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 560
Target Start/End: Complemental strand, 43811980 - 43811950
Alignment:
Q  530 ttacaatttcatcataactttcttctctctc 560  Q
    |||||||||||||||||||||||||||||||    
T  43811980 ttacaatttcatcataactttcttctctctc 43811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 30695293 - 30695545
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgta 30695492  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataa-ctttcttctctctc 560  Q
    |||||||| ||||||| |||||||||||||||||||||  |||||||||||||    
T  30695493 tgtagaatcaataaagatcaattacaatttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 32486143 - 32485947
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 308 - 560
Target Start/End: Complemental strand, 40367758 - 40367517
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||            |||||||||    
T  40367758 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgt 40367671  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagatattgtatataagctacctcctttgtacatttttg 506  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  40367670 tagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttca 40367571  T
Q  507 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||||||||| |||||   ||||||||||||||||||||| |||||||||||||    
T  40367570 tatgtagaatcaataagaatcaattacaatttcatcataattttcttctctctc 40367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 309 - 560
Target Start/End: Complemental strand, 40371892 - 40371655
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    ||||| |||||||||||||||||||||| |||||||| |||||              | |||||||||||||||||||||||||||||||||||||  ||    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcata 40371707  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||||||| |||||   |||| |||||||||||||||| |||||||||||||    
T  40371706 tgtagaatcaataagaatcaactacaatttcatcataattttcttctctctc 40371655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaatt-acattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502407 ttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 308 - 504
Target Start/End: Complemental strand, 26336965 - 26336767
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||  || ||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  26336965 atgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgttt 26336866  T
Q  406 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336865 gttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 329 - 494
Target Start/End: Original strand, 43384972 - 43385138
Alignment:
Q  329 agtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 428  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  429 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 494  Q
    ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 7099532 - 7099374
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7099532 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7099433  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099432 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 12023288 - 12023446
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  12023288 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 12023387  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023388 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 309 - 462
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 16798668 - 16798826
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  16798668 atgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16798767  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798768 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 357 - 490
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  357 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 456  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  457 agcaacttagctagatattgtatataagctacct 490  Q
    ||||||||| ||||| ||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 10274546 - 10274698
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||| ||||   ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274646 agagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 303 - 417
Target Start/End: Original strand, 10277198 - 10277312
Alignment:
Q  303 agagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaag 402  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| |||||||||||    
T  10277198 agaggatgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaag 10277297  T
Q  403 tttgttagaggttag 417  Q
    || ||||||| ||||    
T  10277298 ttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 37682035 - 37682277
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||           
T  37682035 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtta------- 37682127  T
Q  406 gttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 503  Q
        |||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||     
T  37682128 ----gaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattc 37682220  T
Q  504 ttgtatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
     | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  37682221 at-tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 37682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 37658732 - 37658973
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||| |||  |||||||||| ||||||||||||||||||            
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatgaagtttgtta-------- 37658823  T
Q  407 ttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
       |||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||      
T  37658824 ---gaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattca 37658917  T
Q  505 tgtatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  37658918 t-tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 37658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 278541 - 278689
Alignment:
Q  162 atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgt 260  Q
    ||||||||||||||||  ||  ||||||||||||  ||| |||||| ||| ||||||||||| ||||||| |||||||||||   |||||||||||||||    
T  278541 atgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgt 278640  T
Q  261 taactgtagaaagaatgtaagatgggcttctatatgctctgaagagaat 309  Q
    ||| ||||| ||||   | || || ||||||||| || |||||||||||    
T  278641 taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaat 278689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  357 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctag 431  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 278393 - 278511
Alignment:
Q  24 ttctgaaccagaagag-ataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaag--ccgtaaatcttct 120  Q
    |||||||||||||||| ||||||| |  ||||||||||| ||||||||||||| ||||| ||  ||||||| | ||||||| |||  || | ||||||||    
T  278393 ttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagctcaaatgagg-taacaaacagaaggcccatgaatcttct 278491  T
Q  121 aaatatttcacttactactg 140  Q
    |||| | || ||||||||||    
T  278492 aaatgtctcccttactactg 278511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 16794310 - 16794360
Alignment:
Q  511 tagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  16794310 tagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 16798871 - 16798921
Alignment:
Q  511 tagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  16798871 tagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 7099329 - 7099280
Alignment:
Q  511 tagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||||| || |||| ||| |||||| ||||||||||||||||||||||||    
T  7099329 tagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7099280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 7103898 - 7103849
Alignment:
Q  511 tagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||||| || |||| ||| |||||| ||||||||||||||||||||||||    
T  7103898 tagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7103849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 465
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  433 gtttgttacattgcttgtgcttcaagcaactta 465  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 27761396 - 27761649
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  27761396 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 27761495  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 507  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27761496 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttat 27761595  T
Q  508 atgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 560  Q
    ||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||    
T  27761596 atgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 27761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 27756846 - 27757098
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27756946 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27757045  T
Q  509 tgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 560  Q
    |||||||| ||||||| ||| |||||| |||||||||||||||||||||||||    
T  27757046 tgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 27757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 315 - 560
Target Start/End: Complemental strand, 47419729 - 47419483
Alignment:
Q  315 tttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggt 414  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  415 tagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtaga 514  Q
    ||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtaga 47419530  T
Q  515 attaataaaggtcaattacaatttcatcataacttt-cttctctctc 560  Q
    || ||||||  ||||||||||||||||||||| ||| ||||||||||    
T  47419529 atcaataaaaatcaattacaatttcatcataattttacttctctctc 47419483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 22901154 - 22901407
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 506  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 22901352  T
Q  507 tatgtagaattaataaaggtca-attacaatttcatcataactttcttctctctc 560  Q
    |||||||||| ||||||| |||  |||||| ||||||||||||||||||||||||    
T  22901353 tatgtagaatcaataaagatcattttacaaattcatcataactttcttctctctc 22901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 308 - 490
Target Start/End: Original strand, 35705633 - 35705815
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgtt-atgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  35705633 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttg 35705732  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacct 490  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  35705733 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 7466669 - 7466485
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 322 - 498
Target Start/End: Complemental strand, 733811 - 733634
Alignment:
Q  322 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtag 420  Q
    |||||||||||||| |||||||||||||   | || |||||||| |||| ||   ||||||||||||||| |||||||||| ||||||||||||||| |     
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  421 ataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 498  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 7940241 - 7940083
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7940241 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7940142  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940141 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 309 - 462
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 321 - 481
Target Start/End: Complemental strand, 13828248 - 13828087
Alignment:
Q  321 ttaattcaagtttagtttagtgataatcacaatcaat-ggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagta 419  Q
    ||||||||||||||  |||||||||||||   | | | ||||||| |||||||  ||| ||||||| ||||||||||||||||||||||||||  ||       
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  420 gataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat 481  Q
     |||| |  ||| || |||||||||||||||||||||||| || || ||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 560
Target Start/End: Complemental strand, 7940041 - 7939989
Alignment:
Q  508 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  7940041 atgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 560
Target Start/End: Complemental strand, 7944594 - 7944542
Alignment:
Q  508 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  7944594 atgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7944542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 417
Target Start/End: Original strand, 37355573 - 37355669
Alignment:
Q  321 ttaattcaagtttagtttagtgataatcacaatcaatggttaattacatt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 417  Q
    ||||||||||||||  | ||||||||||||| | | |||||||| | ||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 21847108 - 21847362
Alignment:
Q  308 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21847108 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  406 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 505  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  506 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  21847308 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctctctc 21847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 21850198 - 21850452
Alignment:
Q  308 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21850198 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  406 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 505  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  506 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  21850398 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctctctc 21850452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 308 - 504
Target Start/End: Original strand, 43547722 - 43547920
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 405  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43547722 atgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagttt 43547821  T
Q  406 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547822 gttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 9697586 - 9697783
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 54172082 - 54171924
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54172082 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54171983  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171982 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 54167502 - 54167344
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54167502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54167403  T
Q  406 gttagaggttagtagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||  | ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167402 gttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 309 - 462
Target Start/End: Complemental strand, 39399279 - 39399127
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399179 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 385 - 505
Target Start/End: Original strand, 43554645 - 43554765
Alignment:
Q  385 tatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataag 484  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||| || ||||||||||||||  ||| ||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  485 ctacctcctttgtacattttt 505  Q
    ||||||| |||||| ||||||    
T  43554745 ctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 39 - 263
Target Start/End: Complemental strand, 24685444 - 24685238
Alignment:
Q  39 gataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactac 138  Q
    |||||||| || |||| ||| || ||||||||||||  ||||| || || |||||| |||||||| ||||||  |||||||||||| || ||||||| ||    
T  24685444 gataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttaccac 24685345  T
Q  139 tgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttatagg 238  Q
    ||||||||||||||                   |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  24685344 tgtttttctctctct------------------ttttcctgcacagtttatggtttgtgtttgattttgtgagattcttctggttatttgattttatagg 24685263  T
Q  239 tcccgcggaacaagaggaatgttaa 263  Q
    ||||   ||||||||||||||||||    
T  24685262 tccccaagaacaagaggaatgttaa 24685238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 63 - 258
Target Start/End: Complemental strand, 24632035 - 24631841
Alignment:
Q  63 tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttaga 162  Q
    |||||||||||||  |||| |||||||||||| |||| | |||||||  |||||||||||||||||||||||||| ||||| | ||||| | |||| | |    
T  24632035 tcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatgtttct-tctcttccaagtgata 24631937  T
Q  163 tgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaat 258  Q
    || ||||| ||||||  || | |||||||| ||| || |||||||||||||| |||  |||||||||||||||  |||||   |||||||||||||    
T  24631936 tggatttctttttccaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 370 - 490
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  370 tttgttttagtttgttatgaagtttgttacaagtttgttagag-gttagtagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttagc 467  Q
    |||||||||||||||| |||||||||||||||||||||||||| || | || |||| |   ||| ||||||||||||||||||||||||||| || || |    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaacta-ataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T
Q  468 tagatattgtatataagctacct 490  Q
    |||||  ||||||||||||||||    
T  755990 tagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 43554291 - 43554371
Alignment:
Q  308 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattacattttg-ttttagtttgtta 386  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||| |||||||||||||    
T  43554291 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 24682594 - 24682519
Alignment:
Q  166 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcc 241  Q
    |||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24682594 atttacttttcctgcacagtttattgtttgcgtttgattttatgagattctcctggttctttgattttataggtcc 24682519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 275
Target Start/End: Complemental strand, 24653664 - 24653501
Alignment:
Q  113 aatcttctaaatatttcacttactactgtttttctctctccaaagttagatgcatttcctttt--cctgcaaagtttatggtttgtgtttgattttgtg- 209  Q
    |||||||||||||||||||||||||||||||  || | |||| | | | |||||||| |||||  |||||| ||||||| || ||||||||||||| ||     
T  24653664 aatcttctaaatatttcacttactactgttt--ctttttccata-tgatatgcatttacttttttcctgcacagtttattgtgtgtgtttgattttatgc 24653568  T
Q  210 -agattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaa 275  Q
     |||||||||| ||| |||||||||||||||||    |||  ||||||||||||| ||||| |||||    
T  24653567 gagattctcctggttctttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaa 24653501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 38175894 - 38175790
Alignment:
Q  357 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 456  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| ||| ||||||||| | |||||| |||||    
T  38175894 tggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttca 38175796  T
Q  457 agcaac 462  Q
    ||||||    
T  38175795 agcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  379 gtttgttatgaagtttgttacaagtttgttagag 412  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 309 - 549
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcata 39794029  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataactt 549  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  39794030 tgtagaatcaataaagatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 309 - 560
Target Start/End: Complemental strand, 16588635 - 16588383
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    ||||||||  | ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgta 16588436  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataac-tttcttctctctc 560  Q
    || ||||| |||||   |||||||||||||||||||||| |||||||||||||    
T  16588435 tggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 16588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 26316012 - 26316251
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||    
T  26316012 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgt 26316099  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||    
T  26316100 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgt 26316198  T
Q  508 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26316199 atgcagaatcaataaagatcaattacaatttcatcataactttcttctctctc 26316251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 26311522 - 26311760
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26311609  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||    
T  26311610 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgta 26311708  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    || ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26311709 tgcagaatcaataaagatcaattacaatttcatcataactttcttctctctc 26311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 308 - 504
Target Start/End: Complemental strand, 43591979 - 43591783
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||  || ||| ||||||||||||||||||||||||||||  ||||    
T  43591979 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgt 43591880  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591879 tagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 10504435 - 10504588
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  10504435 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagt 10504534  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504535 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 465
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  433 gtttgttacattgcttgtgcttcaagcaactta 465  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 308 - 560
Target Start/End: Complemental strand, 27552268 - 27552014
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  27552268 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgt 27552169  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-g 506  Q
    || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27552168 taaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcg 27552069  T
Q  507 tatgtagaattaataaaggtcaattacaatttcatcataac-tttcttctctctc 560  Q
    |||| ||||| |||||   |||||||||||||||||||||| |||||||||||||    
T  27552068 tatggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 27552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 309 - 549
Target Start/End: Complemental strand, 8320199 - 8319960
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-ta 8320001  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataactt 549  Q
    |||||||| ||||||| |||||| || ||||||||||||||    
T  8320000 tgtagaatcaataaagatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 308 - 549
Target Start/End: Complemental strand, 8315662 - 8315421
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  8315662 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttca 8315464  T
Q  507 tatgtagaattaataaaggtcaattacaatttcatcataactt 549  Q
    |||||||||| ||||||| |||||| || ||||||||||||||    
T  8315463 tatgtagaatcaataaagatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 309 - 550
Target Start/End: Original strand, 17779914 - 17780156
Alignment:
Q  309 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 507  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgt 17780113  T
Q  508 atgtagaattaataaaggtcaattacaatttcatcataacttt 550  Q
    ||||||||| |||||   |||||||||||||||||||||||||    
T  17780114 atgtagaatcaataagaatcaattacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 307 - 560
Target Start/End: Complemental strand, 27574886 - 27574643
Alignment:
Q  307 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||            
T  27574886 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt- 505  Q
       |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttc 27574698  T
Q  506 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    ||||| | ||| |||||   ||||||||||||||| ||||| |||  ||||||||    
T  27574697 gtatggaaaatcaataagaatcaattacaatttcaccataatttttctctctctc 27574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 309 - 498
Target Start/End: Complemental strand, 17895881 - 17895691
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 498  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895781 tagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 14531945 - 14531749
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 308 - 498
Target Start/End: Complemental strand, 17887001 - 17886816
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||||       |||||||    
T  17887001 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttg 17886908  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 498  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 462
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  347 tcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgc 446  Q
    ||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  447 ttgtgcttcaagcaac 462  Q
    |||| |||||||||||    
T  6440880 ttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  370 tttgttttagtttgttatgaagtttgttacaagtttgttaga 411  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  374 ttttagtttgttatgaagtttgttacaagtttgttagag 412  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 411
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  322 taattcaagtttagtttagtgataatcacaatcaatgg-ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttaga 411  Q
    |||||||||||||| |||||||||||||  || | | | || || | | |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 31670089 - 31670341
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31670089 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 506  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 31670287  T
Q  507 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
     ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  31670288 aatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 31670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 308 - 504
Target Start/End: Original strand, 53722006 - 53722202
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53722006 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 53722105  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722106 tagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 10317220 - 10317025
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 308 - 504
Target Start/End: Complemental strand, 8892779 - 8892582
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  8892779 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 27186142 - 27186341
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt--agttt-gttatgaagtttgttacaagtt 404  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  405 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 302 - 504
Target Start/End: Complemental strand, 43683826 - 43683636
Alignment:
Q  302 aagagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaa 401  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||       
T  43683826 aagacaatgttagtt-gttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta--- 43683731  T
Q  402 gtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacat 501  Q
            |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  43683730 --------gaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatat 43683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 44151557 - 44151808
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  44151557 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44151656  T
Q  406 gttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 503  Q
    |||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||     
T  44151657 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattc 44151753  T
Q  504 ttgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
     |  | ||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  44151754 at--aagtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 44151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 44147023 - 44147273
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  407 ttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||      
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattca 44147219  T
Q  505 tgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    |  | ||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  44147220 t--aagtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 44147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 308 - 504
Target Start/End: Complemental strand, 50628088 - 50627904
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||| || |||| |||||||||||||            ||||||||    
T  50628088 atgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttg 50628002  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  50628001 ttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||| ||||   ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 405 - 504
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  405 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 31359150 - 31359303
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| | || |||||| |||||| ||||||||||||| ||    
T  31359150 atgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagt 31359249  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359250 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 462
Target Start/End: Complemental strand, 49274670 - 49274517
Alignment:
Q  307 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |    
T  49274670 aatgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  407 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 31354678 - 31354772
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtt 404  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| | |||||||| |||||| | || || |||||||||| |||||||||||||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 343 - 503
Target Start/End: Original strand, 53785880 - 53786039
Alignment:
Q  343 ataatcacaatcaatggttaattacattt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgtta 440  Q
    ||||||||| ||| |||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||||||   |||   |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  441 cattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 503  Q
    ||| |||||||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacct-ctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  360 ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagag 412  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  336 tttagtgataatcacaatcaatggttaattacattttgttttagtttgtta 386  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 3771044 - 3771093
Alignment:
Q  512 agaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    ||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3771044 agaatcaataaagatcatttacaattttcatcataactttcttctctctc 3771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 308 - 560
Target Start/End: Original strand, 8055391 - 8055643
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||    
T  8055391 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgt 8055490  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  8055491 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 8055589  T
Q  508 atgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 560  Q
    ||||||||| ||||||| ||  |||||| |||||||||||||||||||||||||    
T  8055590 atgtagaatcaataaagatcttttacaattttcatcataactttcttctctctc 8055643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 309 - 560
Target Start/End: Original strand, 8050839 - 8051090
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcata 8051037  T
Q  509 tgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 560  Q
    |||||||| ||||||| ||  |||||| |||||||||||||||||||||||||    
T  8051038 tgtagaatcaataaagatcttttacaattttcatcataactttcttctctctc 8051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 309 - 558
Target Start/End: Complemental strand, 6463583 - 6463345
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 508  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagta 6463396  T
Q  509 tgtagaattaataaaggtcaattacaatttcatcataac-tttcttctctc 558  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||    
T  6463395 tgtagaatcaataaagatcaattacaatttcatcataacttttcttctctc 6463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 12999622 - 12999426
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 36670502 - 36670660
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36670502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36670601  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670602 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 36675050 - 36675208
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36675050 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36675149  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675150 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 309 - 471
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 471  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 462
Target Start/End: Complemental strand, 35950596 - 35950443
Alignment:
Q  308 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  35950596 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagt 35950497  T
Q  408 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||| ||||    |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950496 tagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  309 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 408  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | || ||||| | |||| | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  409 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  322 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 409  Q
    ||||||||||||||||||||||||||||  || || || || || ||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 462
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  374 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 36670701 - 36670755
Alignment:
Q  507 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    ||| |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  36670701 tatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36670755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 36675249 - 36675303
Alignment:
Q  507 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    ||| |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  36675249 tatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 27403733 - 27403696
Alignment:
Q  363 attacattttgttttagtttgttatgaagtttgttaca 400  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27403733 attacactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 308 - 560
Target Start/End: Complemental strand, 45023 - 44771
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  45023 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44924  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 503  Q
    |||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||     
T  44923 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttaga-cttgtatataagaccattatcttgtacattc 44827  T
Q  504 ttgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
     | |||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  44826 at-tatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 44771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 309 - 560
Target Start/End: Complemental strand, 49602 - 49351
Alignment:
Q  309 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 504  Q
    ||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||      
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttaga-cttgtatataagaccattatcttgtacattca 49406  T
Q  505 tgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 560  Q
    | |||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  49405 t-tatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 49351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 2979 - 3137
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  2979 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3078  T
Q  406 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3079 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 7505 - 7662
Alignment:
Q  308 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7505 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  407 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 462  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 508 - 560
Target Start/End: Original strand, 7704 - 7757
Alignment:
Q  508 atgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 560  Q
    ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  7704 atgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 7757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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