View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_low_20 (Length: 242)
Name: NF21018_low_20
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 7906138 - 7905922
Alignment:
| Q |
16 |
gtccaaaaggggacagcttggacttggaaaacatgttactgaagctgttgtgccttctagagttgaagcactttctcgacaaaacgtagttaaggtactt |
115 |
Q |
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| T |
7906138 |
gtccaaaaggggacagcttggacttggaaaacatgttactgaagctgttgtgccttctagagttgaagcactttctcgacaaaacgtagttaaggtactt |
7906039 |
T |
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| Q |
116 |
tagcttaattaagctttctttttctacaaccattgcataagttatgttacacgtgtccagcctaacaatatcaacattgtaagatcaagatgaaacatct |
215 |
Q |
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| T |
7906038 |
tagcttaattaagttttctttttctacaagcattgcataagttatgttacacgtgtccagcctaacaatatcaacattgtaagatcaagatgagacatct |
7905939 |
T |
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| Q |
216 |
ccaatagtataatctac |
232 |
Q |
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|||||||||||| |||| |
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| T |
7905938 |
ccaatagtataagctac |
7905922 |
T |
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