View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21018_low_21 (Length: 238)

Name: NF21018_low_21
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21018_low_21
NF21018_low_21
[»] chr8 (2 HSPs)
chr8 (1-103)||(19644505-19644607)
chr8 (160-221)||(19644389-19644450)
[»] chr3 (2 HSPs)
chr3 (1-103)||(7009459-7009561)
chr3 (160-221)||(7009341-7009402)
[»] chr4 (2 HSPs)
chr4 (1-103)||(22695041-22695143)
chr4 (163-221)||(22694925-22694983)
[»] chr1 (4 HSPs)
chr1 (1-103)||(4342384-4342487)
chr1 (6-101)||(5928004-5928105)
chr1 (160-221)||(4342267-4342328)
chr1 (160-219)||(5927888-5927947)
[»] chr5 (2 HSPs)
chr5 (39-103)||(22811177-22811241)
chr5 (160-221)||(22811293-22811354)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 19644607 - 19644505
Alignment:
Q  1 caatctaaagtactcatacaatgcaaataatattcattagtatcatttgatgaaaaacatagatgctattttcaaactccatcaatatgattaatatttc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  19644607 caatctaaagtactcatacaatgcaaataatattgattagtatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatatttc 19644508  T
Q  101 agg 103  Q
    |||    
T  19644507 agg 19644505  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 19644450 - 19644389
Alignment:
Q  160 tgttttttatttaggcattttatcaagcaaatcaaatgcaatgttatcaaaagtgaattaat 221  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  19644450 tgttttttatttaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaattaat 19644389  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7009561 - 7009459
Alignment:
Q  1 caatctaaagtactcatacaatgcaaataatattcattagtatcatttgatgaaaaacatagatgctattttcaaactccatcaatatgattaatatttc 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  7009561 caatctaaagcactcatacaatgcaaataatattcattagtatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatatttc 7009462  T
Q  101 agg 103  Q
    |||    
T  7009461 agg 7009459  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 7009402 - 7009341
Alignment:
Q  160 tgttttttatttaggcattttatcaagcaaatcaaatgcaatgttatcaaaagtgaattaat 221  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  7009402 tgttttttatttaggcattttatcaaacacatcagatgcaatgttatcaaaattgaattaat 7009341  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 22695143 - 22695041
Alignment:
Q  1 caatctaaagtactcatacaatgcaaataatattcattagtatcatttgatgaaaaacatagatgctattttcaaactccatcaatatgattaatatttc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  22695143 caatctaaagtactcatacaatggaaataatattcattagtatcatttgatgaaaagcatagaagctattttcaaactccatcaatatcattaatatttc 22695044  T
Q  101 agg 103  Q
    |||    
T  22695043 agg 22695041  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 22694983 - 22694925
Alignment:
Q  163 tttttatttaggcattttatcaagcaaatcaaatgcaatgttatcaaaagtgaattaat 221  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  22694983 tttttatttaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaattaat 22694925  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4342487 - 4342384
Alignment:
Q  1 caatctaaagtactcatacaatgcaaataatatt-cattagtatcatttgatgaaaaacatagatgctattttcaaactccatcaatatgattaatattt 99  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  4342487 caatctaaagcactcatacaatgcaaataatatttcattagtatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatattt 4342388  T
Q  100 cagg 103  Q
    ||||    
T  4342387 cagg 4342384  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5928105 - 5928004
Alignment:
Q  6 taaagtactcatacaatgcaaataatattcattagt------atcatttgatgaaaaacatagatgctattttcaaactccatcaatatgattaatattt 99  Q
    ||||| |||||||||||||||||||||||||| | |      |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5928105 taaagcactcatacaatgcaaataatattcatcaatctcattatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatattt 5928006  T
Q  100 ca 101  Q
    ||    
T  5928005 ca 5928004  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 4342328 - 4342267
Alignment:
Q  160 tgttttttatttaggcattttatcaagcaaatcaaatgcaatgttatcaaaagtgaattaat 221  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||    
T  4342328 tgttttttattcaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaattaat 4342267  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 5927947 - 5927888
Alignment:
Q  160 tgttttttatttaggcattttatcaagcaaatcaaatgcaatgttatcaaaagtgaatta 219  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||||| |||||||    
T  5927947 tgtttttttattaggcattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 5927888  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 22811177 - 22811241
Alignment:
Q  39 agtatcatttgatgaaaaacatagatgctattttcaaactccatcaatatgattaatatttcagg 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  22811177 agtatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatatttcagg 22811241  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 22811293 - 22811354
Alignment:
Q  160 tgttttttatttaggcattttatcaagcaaatcaaatgcaatgttatcaaaagtgaattaat 221  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  22811293 tgttttttatttaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaattaat 22811354  T

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