View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_low_3 (Length: 527)
Name: NF21018_low_3
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 34291738 - 34292228
Alignment:
| Q |
19 |
cttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291738 |
cttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaat |
34291837 |
T |
|
| Q |
119 |
tgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34291838 |
tgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccgccacattcctttgcaacct |
34291937 |
T |
|
| Q |
219 |
cttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaa |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291938 |
cttttgctattggattgatatcatttctatctacaacttcccctcacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaa |
34292037 |
T |
|
| Q |
319 |
attgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292038 |
attgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacac |
34292137 |
T |
|
| Q |
419 |
tcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc |
509 |
Q |
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| T |
34292138 |
tcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc |
34292228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 34566233 - 34566711
Alignment:
| Q |
19 |
cttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaat |
118 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||| | |||||||| | ||||||||| | || ||| ||||||||||| | |||| |
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| T |
34566233 |
cttatgttctctgctgtccaaaaactttaaactaagctcaatgctggggtagacaaattttccaacgtctgagaagggagatgattgaaaatttcttaaa |
34566332 |
T |
|
| Q |
119 |
tgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacct |
218 |
Q |
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||||| |||||||| |||||||| |||||||||||||| || ||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
34566333 |
tgtctaagtgcatcctcccatgccgacttcccttcattacttagtgctcttccaactgtcacaattgcaagaggcaagccaccacattcctttgcaacct |
34566432 |
T |
|
| Q |
219 |
cttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaa |
318 |
Q |
| |
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| |||||||||| |||||||| | | ||||||||| | | ||||||| ||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
34566433 |
cacttgctattgggttgatatcatatgtatctacaattccacctgacatctctcgaaatagataccaagcctcatcctccgacaacacagaaacttgaaa |
34566532 |
T |
|
| Q |
319 |
attgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacac |
418 |
Q |
| |
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||| | || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566533 |
attcacattgcatcccaagtttttgcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacac |
34566632 |
T |
|
| Q |
419 |
tcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566633 |
tcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
34566711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 34371825 - 34371746
Alignment:
| Q |
161 |
agtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
240 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
34371825 |
agtgctcgtccaactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatc |
34371746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 34554723 - 34554776
Alignment:
| Q |
180 |
caattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggat |
233 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| | |||||||||||||| |
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| T |
34554723 |
caatagcaagaggcaagcctccacattcctttgcaacttgttttgctattggat |
34554776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 25 - 444
Target Start/End: Original strand, 15895929 - 15896342
Alignment:
| Q |
25 |
ttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaattgtctt |
124 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| || |||| || | |||| ||||| | | |||||||||||||||| | |||||||| | |
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| T |
15895929 |
ttctttgtttcccaaaaactttaaactaagctcaatgcgagggtggacaaatttttcaacatctgacgaggaagatgattgaaaatttcttaattgttta |
15896028 |
T |
|
| Q |
125 |
agtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttg |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||||| || |||||||||||| |||||||||||||| ||| |
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| T |
15896029 |
agtgtgtcttcccatgcagacttcccttcaatgcttagtgctcttccaactgtcacaattgcaaggggcaagccaccacatgcctttgcaacctctcttg |
15896128 |
T |
|
| Q |
225 |
ctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgag |
324 |
Q |
| |
|
|||||||||||||||| | | | | |||||| || |||| || ||| |||| || ||||||||||||||| ||| | ||| ||||||||||| | |
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| T |
15896129 |
ctattggattgatatcatgtttgtttacaacatctcctgccatttcttgaaataggctccaagcttcatcctccgacaatacagggacttgaaaattcac |
15896228 |
T |
|
| Q |
325 |
ttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaag |
424 |
Q |
| |
|
| | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||| |||||| |
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|
| T |
15896229 |
tctgcatcccatattttggcacactttttgatcccgtgatgtgaacaatattttgcaatatttatcacgttct------tgaagtccaatacgctcaaaa |
15896322 |
T |
|
| Q |
425 |
tctagaatatcccacacatc |
444 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
15896323 |
tcaagaatatcccacacatc |
15896342 |
T |
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