View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21018_low_5 (Length: 486)
Name: NF21018_low_5
Description: NF21018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21018_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 2 - 464
Target Start/End: Complemental strand, 48384029 - 48383567
Alignment:
| Q |
2 |
gtggaggagcagagagagtctgcagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctt |
101 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48384029 |
gtggaggcccagagagagtctgcagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctt |
48383930 |
T |
|
| Q |
102 |
tagcaacaatgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48383929 |
tagcaacaatgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcga |
48383830 |
T |
|
| Q |
202 |
tgggccccacgattgattaaaagcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatggacaaaataaagta |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48383829 |
tgggccccacgattgattaaaagcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatgaacaaaataaagta |
48383730 |
T |
|
| Q |
302 |
cttttttcttcaacaaaaagttcatttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48383729 |
cttttttcttcaacaaaaagttcatttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcat |
48383630 |
T |
|
| Q |
402 |
acaatacctccaaagccttaaactccaaagctctgtccttctcagtttctcaaccgttaaact |
464 |
Q |
| |
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| T |
48383629 |
acaatacctccaaagccttaaactccaaagctctgtccttctcagtttctcaaccgttaaact |
48383567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 2 - 464
Target Start/End: Original strand, 48398112 - 48398574
Alignment:
| Q |
2 |
gtggaggagcagagagagtctgcagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctt |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
48398112 |
gtggaggcccagagagagtctgcagaacatattgatggaagatcgattcttgaattcgatcaaagaaagatttgacatggaaactcgatgccaaaatctt |
48398211 |
T |
|
| Q |
102 |
tagcaacaatgtctttataacccacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcga |
201 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||| | ||||||||||||||| |
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| T |
48398212 |
tagcaacaatgtctttatgacccacaaaaatgttccaatgagaagggaaacaagagtccatgttacaccatccaaaatcttcgtggccaatttagatcgc |
48398311 |
T |
|
| Q |
202 |
tgggccccacgattgattaaaagcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatggacaaaataaagta |
301 |
Q |
| |
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||| | ||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||| |||||| ||||||||||| | |
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| T |
48398312 |
tggactccacgattgattaaaagcacccaagtgaggagaaccaaagcaatccaagtgaaaacctggatacatttcttcagtccatgaacaaaataaagca |
48398411 |
T |
|
| Q |
302 |
cttttttcttcaacaaaaagttcatttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcat |
401 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48398412 |
cctttttcttcaataaaaagttcatttcaatcaagaaaaccacaatgtgcgtgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcat |
48398511 |
T |
|
| Q |
402 |
acaatacctccaaagccttaaactccaaagctctgtccttctcagtttctcaaccgttaaact |
464 |
Q |
| |
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||| |||||||||||| |||||||||| ||| |||||| | |||| |||||| |||||||| |
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|
| T |
48398512 |
acaccacctccaaagccccaaactccaaatctccgtcctttttagttcctcaactgttaaact |
48398574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 48364398 - 48363988
Alignment:
| Q |
20 |
tctgcagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctttagcaacaatgtctttat |
119 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
48364398 |
tctgtagaacatattgatgaaagatcgattcttgaattcgatcaaagaaagatttgacatggaaatttgatgccaaaatcattagcaacaatgtctttat |
48364299 |
T |
|
| Q |
120 |
aacccacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcgatgggccccacgattgatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| ||| || | ||||||| |
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| T |
48364298 |
aacccacaaaaatgctccaatgagaagggaaacaagagtccatgttacatcattcaaaaaccttgcggctaatttagatcgctggacctcgtgattgata |
48364199 |
T |
|
| Q |
220 |
aaaagcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatggacaaaataaagtacttttttcttcaacaaaa |
319 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||| |
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| T |
48364198 |
aaaagtacccatgtaaggagaaccaaactgatccaaatgaaaacctggacacattgcttcaacccatggacaaaataaagcacctttttcttcaacaaaa |
48364099 |
T |
|
| Q |
320 |
agttcatttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcatacaatacctccaaagcct |
419 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
48364098 |
agttcatttcaatcaagaaaacaacaatgtgcatgaaccatttggtaactaacaagccaaaaaatgtcaccatcacaagcatacaccacctccaaagccc |
48363999 |
T |
|
| Q |
420 |
taaactccaaa |
430 |
Q |
| |
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||||||||||| |
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|
| T |
48363998 |
taaactccaaa |
48363988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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