View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21019_high_1 (Length: 472)
Name: NF21019_high_1
Description: NF21019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21019_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 42741490 - 42741053
Alignment:
| Q |
13 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741490 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
42741391 |
T |
|
| Q |
113 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatattcaatattacttacctatatttaagcactgtaacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42741390 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacccatattcaatattacttacctatatttaagcactgtaacg |
42741291 |
T |
|
| Q |
213 |
ttaaaaattccttcaaataaaaatatatatgccgttaataaaaatcttttatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
312 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741290 |
ttaaaaattccttcaaataaaa----atatgccgttaataaaaatcttcaatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
42741195 |
T |
|
| Q |
313 |
agcataataattgtaaagattattggcagtgaaggcttgatcctatcggtggttattcggatcgggtaatcagttgatgtttacccaagaggtgcataac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
42741194 |
agcataataattgtaaagattattggcagtgaaggcttaattctatcggtggttattcggctcgggtaatcagttgatgtttacccaagaggagcataac |
42741095 |
T |
|
| Q |
413 |
tttaatgctacttcagatttaatttggcacaaacatgttttc |
454 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42741094 |
tttaatgctatttcagatttaatttggcacaaacatgttttc |
42741053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 21745610 - 21745198
Alignment:
| Q |
13 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745610 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
21745511 |
T |
|
| Q |
113 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatattcaatattacttacctatatttaagcactgtaacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21745510 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattatta--------------------cttacctatatttaagcactgtaacg |
21745431 |
T |
|
| Q |
213 |
ttaaaaattccttcaaataaaaatatatatgccgttaataaaaatcttttatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745430 |
ttaaaaattccttcaaataaaaatat----gccgttaataaaaatcttctatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
21745335 |
T |
|
| Q |
313 |
agcataataattgtaaagattattggcagtgaaggcttgatcctatcggtggttattcggatcgggtaatcagttgatgtttacccaagaggtgcataac |
412 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
21745334 |
agcataataattgtaaagattattgac-----aggcttgatcctatcggtggttattcggctcgggtaatcagttgatgtttacctaggaggtgcataac |
21745240 |
T |
|
| Q |
413 |
tttaatgctacttcagatttaatttggcacaaacatgttttc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21745239 |
tttaatgctacttcagatttaatttggcacaaacatgttttc |
21745198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 27601933 - 27601984
Alignment:
| Q |
401 |
gaggtgcataactttaatgctacttcagatttaatttggcacaaacatgttt |
452 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
27601933 |
gaggtgcataactctaatgctacttcagatttaatttggcacaaacaggttt |
27601984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 28308637 - 28308574
Alignment:
| Q |
381 |
atcagttgatgtttacccaagaggtgcataactttaatgctacttcagatttaatttggcacaa |
444 |
Q |
| |
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|||||||| ||| ||| || ||| || |||||| ||||||||||||||||| |||||||||||| |
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| T |
28308637 |
atcagttgttgtctactcaggagatgtataactctaatgctacttcagattgaatttggcacaa |
28308574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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