View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21019_high_3 (Length: 310)
Name: NF21019_high_3
Description: NF21019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21019_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 43019954 - 43020239
Alignment:
| Q |
22 |
gatttagcttctgcaaaaacccatttagcacatttgttattcttacccatcatgaaattaaatcaaaaacaataatatatatactcttgcnnnnnnnnn- |
120 |
Q |
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| T |
43019954 |
gatttagcttctgcaaaaacccatttagcacatttgttattcttacccatcatgaaattaaatcaaaaacaataatatatatactcttgcaaaaaaaaaa |
43020053 |
T |
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| Q |
121 |
-----ggaatatttctaaaagcaactttaaaatcaccaatttagatagtttannnnnnnnnnnnngacaaaattttagatagtttattgtacatgtatac |
215 |
Q |
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| T |
43020054 |
aaaaaggaatatttctaaaagcaactttaaaatcaccaatttagatagtttattttttattttttgacaaaattttagatagtttattgtacatgtatac |
43020153 |
T |
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| Q |
216 |
tttttacaatttgttccatgtgttcttattttacttttcagcacaaattcgcttgtttcttgccaaaaactcattattagtataat |
301 |
Q |
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| T |
43020154 |
tttttacaatttgttccatgtgtttttattttacttttcagcacaaattcgcttgtttcttgccaaaaactcattattagtataat |
43020239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 35058670 - 35058779
Alignment:
| Q |
189 |
tttagatagtttattgtacatgtatactttttacaatttgttccatgtgttcttattttacttttcagcacaaattcgcttgtttcttgccaaaaactca |
288 |
Q |
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| T |
35058670 |
tttagatagtttattgtacatgactagtttttacaatttgtaccatgtgtttttattatacttttcagcacaaaatcgcttgtttcttgccaaaaactca |
35058769 |
T |
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| Q |
289 |
ttattagtat |
298 |
Q |
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| T |
35058770 |
ttattagtat |
35058779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 42808267 - 42808370
Alignment:
| Q |
195 |
tagtttattgtacatgtatactttttacaatttgttccatgtgttcttattttacttttcagcacaaattcgcttgtttcttgccaaaaactcattatta |
294 |
Q |
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| T |
42808267 |
tagtttattgtacatgactactttatacaatttgtgtcatgtgttcgtattttatttttcagcacaaactcgcttggttcttgccataaactcattatta |
42808366 |
T |
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| Q |
295 |
gtat |
298 |
Q |
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|||| |
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| T |
42808367 |
gtat |
42808370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 35058550 - 35058598
Alignment:
| Q |
29 |
cttctgcaaaaacccatttagcacatttgttattcttacccatcatgaa |
77 |
Q |
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| T |
35058550 |
cttctgcaaaaacccatttggcacatttgttattctgacccatcatgaa |
35058598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 35058643 - 35058682
Alignment:
| Q |
128 |
ttctaaaagcaactttaaaatcaccaatttagatagttta |
167 |
Q |
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| T |
35058643 |
ttctaaaagcaactttaaaatcatcaatttagatagttta |
35058682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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