View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21019_low_6 (Length: 228)
Name: NF21019_low_6
Description: NF21019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21019_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 52704861 - 52704717
Alignment:
| Q |
46 |
gtaaaagatcttataacagagcacggaaggagtacatatttagacattatnnnnnnn-catcattctttaaaaatttagaatttcttaacaaattataaa |
144 |
Q |
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| T |
52704861 |
gtaaacgatcttataacaaagcacggaaggagtacatatttagacattataaaaaaaacatcattctttaaaaatttagaatttcttaacagattataaa |
52704762 |
T |
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| Q |
145 |
ttaaagagggttaaattagttaactcttctaatttactcttcttt |
189 |
Q |
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| T |
52704761 |
ttaaagagggttaaattagttaactcttctaatttactcttcttt |
52704717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 52704696 - 52704665
Alignment:
| Q |
197 |
ccttgtaaatctttcttaacacgtgaaagtca |
228 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52704696 |
ccttgtaaatctttcttaacacgtgaaagtca |
52704665 |
T |
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