View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2101_low_2 (Length: 235)
Name: NF2101_low_2
Description: NF2101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2101_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34084799 - 34085027
Alignment:
| Q |
1 |
agatgtaaatagatcagaaactatgactaaataatatctcaatttttccccnnnnnnnnnt-----gaattagatcaatttcaaacctcaaatttctcat |
95 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34084799 |
agatttaaatagatcagaaactatgactaaataatatctcaatttttccccaaaaaaaaaaaaaaagaattagatcaatttcaaacctcaaatttctcat |
34084898 |
T |
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| Q |
96 |
gcagcattaatttccatgtgtgacttcaataccttcacatgtccttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtc |
195 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34084899 |
gcagcattaatttccatgtgtgacttcaatgccttcacatgtccttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtc |
34084998 |
T |
|
| Q |
196 |
tccatgaacgcttcaacaatgacatgatg |
224 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34084999 |
tccatgaacgcttcaacaatgacatgatg |
34085027 |
T |
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