View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21020_low_2 (Length: 237)
Name: NF21020_low_2
Description: NF21020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21020_low_2 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46933412 - 46933632
Alignment:
| Q |
1 |
tctcaaccacgagcattatagtcttgctttcataccagttgcacctctttggaaggagttgagaaaaatatgcaacactcaattattttctcacaagact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933412 |
tctcaaccacgagcattatagtcttgctttcataccagttgcacctctttggaaggaattgagaaaaatatgcaacactcaattattttctcacaagact |
46933511 |
T |
|
| Q |
101 |
cttgatgctagtcaagatgttagacgcaagaaaatgcaacagcttctcaatgatatcaatcaaagcagtcaaatcggtgaagcaatagatatcggaacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933512 |
cttgatgctagtcaagatgttagacgcaagaaaatgcaacagcttctcaatgatatcaatcaaagcagtcaaatcggtgaagcaatagatatcggaacag |
46933611 |
T |
|
| Q |
201 |
cagttttcaagaccaccataa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
46933612 |
cagttttcaagaccaccataa |
46933632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46926547 - 46926767
Alignment:
| Q |
1 |
tctcaaccacgagcattatagtcttgctttcataccagttgcacctctttggaaggagttgagaaaaatatgcaacactcaattattttctcacaagact |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || || |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |
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| T |
46926547 |
tctcaaccatgagcagtatagtcttgctttcatgcccatttcaccactttggaaggaattgagaaaaatatgcaacactcaattactttctcacaagagt |
46926646 |
T |
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| Q |
101 |
cttgatgctagtcaagatgttagacgcaagaaaatgcaacagcttctcaatgatatcaatcaaagcagtcaaatcggtgaagcaatagatatcggaacag |
200 |
Q |
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|||||||| || ||||| ||||| || || ||||| ||||||||||||||||||||| ||||||||||| |||| |||||||| || || || |||||| |
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| T |
46926647 |
cttgatgccagccaagacgttaggcgtaaaaaaattcaacagcttctcaatgatatccatcaaagcagtaaaattggtgaagctattgacattggaacaa |
46926746 |
T |
|
| Q |
201 |
cagttttcaagaccaccataa |
221 |
Q |
| |
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||| |||||||| ||||||| |
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| T |
46926747 |
tagtgttcaagactaccataa |
46926767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11107511 - 11107293
Alignment:
| Q |
1 |
tctcaaccacgagcattatagtcttgctttcataccagttgcacctctttggaaggagttgagaaaaatatgcaacactcaattattttctcacaagact |
100 |
Q |
| |
|
||||||||| || || ||||||||||| |||| ||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| | |
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| T |
11107511 |
tctcaaccatgaccaatatagtcttgcattcacacccatttcacctctttggaaggaattgagaaaaatatgcaacactcaattactttctcataagagt |
11107412 |
T |
|
| Q |
101 |
cttgatgctagtcaagatgttagacgcaagaaaatgcaacagcttctcaatgatatcaatcaaagcagtcaaatcggtgaagcaatagatatcggaacag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| | ||| ||||| | |||||| |||||||||||||||| |||||||||||||| || |||||| |
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| T |
11107411 |
cttgatgctagtcaagatgttaggcgcatgaaaattcgacaacttcttagtgatattcatcaaagcagtcaaattggtgaagcaatagacattggaacaa |
11107312 |
T |
|
| Q |
201 |
cagttttcaagaccaccat |
219 |
Q |
| |
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||| |||||||| ||||| |
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| T |
11107311 |
tagtgttcaagactaccat |
11107293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2950 - 2732
Alignment:
| Q |
1 |
tctcaaccacgagcattatagtcttgctttcataccagttgcacctctttggaaggagttgagaaaaatatgcaacactcaattattttctcacaagact |
100 |
Q |
| |
|
||||||||| || || ||||||||||| |||| ||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| | |
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| T |
2950 |
tctcaaccatgaccaatatagtcttgcattcacacccatttcacctctttggaaggaattgagaaaaatatgcaacactcaattactttctcataagagt |
2851 |
T |
|
| Q |
101 |
cttgatgctagtcaagatgttagacgcaagaaaatgcaacagcttctcaatgatatcaatcaaagcagtcaaatcggtgaagcaatagatatcggaacag |
200 |
Q |
| |
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||||||||||||||||||||||| |||| |||||| | ||| ||||| | |||||| |||||||||||||||| |||||||||||||| || |||||| |
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| T |
2850 |
cttgatgctagtcaagatgttaggcgcatgaaaattcgacaacttcttagtgatattcatcaaagcagtcaaattggtgaagcaatagacattggaacaa |
2751 |
T |
|
| Q |
201 |
cagttttcaagaccaccat |
219 |
Q |
| |
|
||| |||||||| ||||| |
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|
| T |
2750 |
tagtgttcaagactaccat |
2732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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