View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21021_low_1 (Length: 605)
Name: NF21021_low_1
Description: NF21021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21021_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Complemental strand, 40233786 - 40233213
Alignment:
| Q |
17 |
agttaacaattaaaactacaagtacactagccactcaatcacaaaaaagaacaacactgatcagtggtcaccacataacaaggtgcccacacccatataa |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40233786 |
agttaacaattaaaacaacaagtacactagccactcaatcacaaaaaagaacaacactgatcagtggtcaccacataacaaggtgcccatacccatataa |
40233687 |
T |
|
| Q |
117 |
gaactcaatttagttcaccagtaaattttagaataaagctgaatacaaacatgctaagtttcacagtcacaatcatccttttctgcactttccttgctca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40233686 |
gaactcaatttagttcaccagtaaattttagaataaagctgaatacaaacatgctaagtttcacagtcacaatcatccttttctgcactttccttgctca |
40233587 |
T |
|
| Q |
217 |
aaactataatcacataaatcaaaattctaaattttcaagcaagaattctatccaatagaagaaaagataattgtcatgatttaatttatgctataataaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40233586 |
aaactataatcacataaatcaaaattttaaattttcaagcaagaattctatccaatagaagaaaagataattgtcatgatttaatttatgctataataaa |
40233487 |
T |
|
| Q |
317 |
gatggcactaaagtctagtgcttttacatgatacataacaacagactttccaattcctgaaacttaacagaatcacaaaaatcatcattccatcaaactc |
416 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40233486 |
gatgacactaaagtctagtgcttttacatgatacataacaacagactttccaactcctgaaacttaacagaatcacaaaaatcatcattccatcaaactc |
40233387 |
T |
|
| Q |
417 |
actaggctactttacaaatgtcttcatattccacggctttaagcaccctaccatcataggcacctttctctatctgcaccttagcacaaaaccgatctgt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40233386 |
actaggctactttacaaatgtcttcatattccacggctttaagcaccctaccatcataggcacctttctctatctgcaccttagcacaaaaacgatctgt |
40233287 |
T |
|
| Q |
517 |
atccacccccagcagcctagcaagtgatccgcgataagccccgttgactatttttacacggcccccaacctgtg |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40233286 |
atccacccccagcagcctagcaagtgatccgcgataagccccgttgactatttttacacggcccccaacctgtg |
40233213 |
T |
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