View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21021_low_4 (Length: 429)
Name: NF21021_low_4
Description: NF21021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21021_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 44542163 - 44541762
Alignment:
| Q |
18 |
aaacagaggatgaacctcaagatgacataacaaccacagaaacagagaacaccnnnnnnnnnnnnnnnnnnntcacatacactgacgaagatacctcaaa |
117 |
Q |
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| T |
44542163 |
aaacagaggatgaacctcaagatgacataacaaccacagaaacagagaacaccgatgatgatgatgatg---tcacatacaccgacgaagatacctcaaa |
44542067 |
T |
|
| Q |
118 |
agcaactgagactacctcccttgatcacaaggaagggctgatagaacaagaattcaagaaatattactgtgaaagcaatgtttgcagtgacttatatgca |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44542066 |
agcaactgagactacctcccttgatgacaaggaagggctgatagaacaagaattcaagaaatattactgtgaaagcaatgtttgcagtgacttatatgca |
44541967 |
T |
|
| Q |
218 |
aacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagtgaatttcactatgctgcaaaaggaacaaccat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44541966 |
aacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagcgaatttcactatgctgcaaaaggaacaaccat |
44541867 |
T |
|
| Q |
318 |
caatattgacatcatgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtggcttacaggaatctcttaatgtttttga |
417 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44541866 |
caatattgacatcctgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtggcttacaggaatctcttaatgttcttga |
44541767 |
T |
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| Q |
418 |
tgatg |
422 |
Q |
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| T |
44541766 |
tgatg |
44541762 |
T |
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