View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_high_12 (Length: 372)
Name: NF21022_high_12
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 36745251 - 36744894
Alignment:
| Q |
1 |
ttactcacagctccatatttttcgccatctgggtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcc |
100 |
Q |
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| T |
36745251 |
ttactcacagctccatatttttcgccatctgggtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaataggattgtcc |
36745152 |
T |
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| Q |
101 |
tagtggcataagactttggaataggtttgtttatatacttcaagtatgacatgaatgcgtcatggtaatccaaaatgaatagcctctcgtcttgaattgc |
200 |
Q |
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| T |
36745151 |
tagtggcataagactttggaataggtttgtttatatacttcaagtatgacatgaatgcgtcatggtaatccaaaatgaatagcctctcgtcttgaattgc |
36745052 |
T |
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| Q |
201 |
ctgttccacaagtaaatgaatacaaattcaatcaacatcaagaggataaatcaatgaagacatatataatgtcttgtgtgattttctttgaaacaataca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745051 |
ctgttccacaagtaaatgaatacaaattcaatcaacatcaagaggataaatcaatgaagacatatataatgtcttgtgtgattttctttgaaacaataca |
36744952 |
T |
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| Q |
301 |
catatatttaccttttctactgtgagtccatccgtgttaatctccaagtgttcctttg |
358 |
Q |
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| T |
36744951 |
catatatttaccttttctactgtgagtccatccgtgttaatctccaagtgttcttttg |
36744894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 9605267 - 9605114
Alignment:
| Q |
25 |
ccatctgggtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcataagactttggaatag |
124 |
Q |
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| T |
9605267 |
ccatttggatgtggtaaactcaattctatggccactggcttcaaagttccatcatcttttaagaaaaggattgtcctagttgcataag-ctttggcat-- |
9605171 |
T |
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| Q |
125 |
gtttgtttatatacttcaagtatgacatgaatgcgtcatggtaatccaaaatgaata |
181 |
Q |
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| T |
9605170 |
ttttgtttatcttctccaaaaatggcatgaatgcatcatgataatctaagatgaata |
9605114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 6457074 - 6457159
Alignment:
| Q |
33 |
gtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcataagactttg |
118 |
Q |
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| T |
6457074 |
gtgtggcaaacttaattcaattgctattggcttcaaagtcccatcatctttcaagaacaagattgttcttgtggcataagcctttg |
6457159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 6363179 - 6363258
Alignment:
| Q |
31 |
gggtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcata |
110 |
Q |
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| T |
6363179 |
gggtgtggcctacttagttcaatggccaatggcttcaaagttccatcatcttgcaagaaaagaatggttctagtagcata |
6363258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 6450889 - 6450968
Alignment:
| Q |
33 |
gtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcataag |
112 |
Q |
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| T |
6450889 |
gtgtggcaagcttaattcgatggctaatggcttcaaagtcccatcatcttgcaaaaacaagattgtccttgtagcataag |
6450968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 7459075 - 7459162
Alignment:
| Q |
31 |
gggtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcataagactttg |
118 |
Q |
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| T |
7459075 |
gggtgtggcctacttagttcaatggccaatggcttcaaagttccatcattttgcaagaaaagaatggttctagttgcataggactttg |
7459162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 6370044 - 6370093
Alignment:
| Q |
34 |
tgtggcaaacttagttcgatggccaatggctttaaagtcccatcatcttt |
83 |
Q |
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| T |
6370044 |
tgtggcaaacttagctcaatggccaatggattcaaagttccatcatcttt |
6370093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 42688737 - 42688650
Alignment:
| Q |
25 |
ccatctgggtgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcataag |
112 |
Q |
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||||| || ||||||||||||| ||| || |||| |||||||||| | ||||| ||||| | |||||||||||||||||| ||||||| |
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| T |
42688737 |
ccatcaggatgtggcaaacttaattcaatcgccactggctttaaatttccatcttcttttaggaaaaggattgtcctagtagcataag |
42688650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 46710278 - 46710362
Alignment:
| Q |
34 |
tgtggcaaacttagttcgatggccaatggctttaaagtcccatcatctttcaagaaaaggattgtcctagtggcataagactttg |
118 |
Q |
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| T |
46710278 |
tgtggcaaactcaattcaatggccaatggcttcaaagtcccattttgttgcagaaaaagaattgtcctactagcataagtctttg |
46710362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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