View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_high_13 (Length: 349)
Name: NF21022_high_13
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 7819104 - 7819415
Alignment:
| Q |
20 |
tagatgtttttataaaataatttgttggtaactttgtcttttcacttggatttcaaacatcttacgttaatattgggctaaattttgttnnnnnnntaat |
119 |
Q |
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| T |
7819104 |
tagatatttttataaaataatttgttggtaactttgtcttttcacttggatttcaaacatcttacgttaatattgggctaaattttgttaaaaaaataat |
7819203 |
T |
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| Q |
120 |
actattaggcaaaattgtatatttagtttccgaataaattgtccttnnnnnnntgttttccaataaatttataagttatattttgatcccataattaata |
219 |
Q |
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| T |
7819204 |
actattaggcaaaattgtatatttagtttccgaataaattgtccttaaaaaaatgttttctaataaatttataagttatattttgatcccataattaata |
7819303 |
T |
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| Q |
220 |
aacgtttcgttggtctcttaattccacatctgtttgtcaatttaatctcattctattaattttaatccaaaatatctaagatggatcaacattgtaagtg |
319 |
Q |
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| T |
7819304 |
aacgtttcgttggtctcttaattttacatctgtttgtcaatttaatctcattttattaattttaatccaaaatatctaagttggatcaacattgtaagtg |
7819403 |
T |
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| Q |
320 |
atccatcataga |
331 |
Q |
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|||||||||||| |
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| T |
7819404 |
atccatcataga |
7819415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 16757507 - 16757462
Alignment:
| Q |
289 |
aaatatctaagatggatcaacattgtaagtgatccatcatagacct |
334 |
Q |
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| T |
16757507 |
aaatgtctaagatggaccaacattataagtggtccatcatagacct |
16757462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 34258726 - 34258669
Alignment:
| Q |
258 |
aatttaatctcattctattaattttaatccaaaatatctaagatggatcaacattgta |
315 |
Q |
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| T |
34258726 |
aatttgatctcgctctattaattttaacctaaaatatctaaggtggaccaacattgta |
34258669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 18971329 - 18971253
Alignment:
| Q |
239 |
aattccacatctgtttgtcaatttaatctcattctattaattttaatccaaaatatctaagatggatcaacattgta |
315 |
Q |
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| T |
18971329 |
aattccatctctgtttctcaatttaatctcattatgttaattttaacccaaaatatataaggtggaccaacattgta |
18971253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 26666781 - 26666696
Alignment:
| Q |
236 |
cttaattccacatctgtttgtcaatttaatctcattctattaattttaatccaaaatatctaagatggatcaacattgtaagtgat |
321 |
Q |
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| T |
26666781 |
cttaattccatatccgtttgtcaatttggtctcattccgttaattttaacttataatgtctaaggtggatcaacattgtatgtgat |
26666696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 30826741 - 30826808
Alignment:
| Q |
255 |
gtcaatttaatctcattctattaattttaatccaaaatatctaagatggatcaacattgtaagtgatcc |
323 |
Q |
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| T |
30826741 |
gtcaatttaatc-cgttatattaactttaacctaaaatatctaagatggaccaacattgtaattgatcc |
30826808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 12154945 - 12154871
Alignment:
| Q |
250 |
tgtttgtcaatttaatctcattctattaattttaatccaaaatatctaagatggatcaacattgtaagtgatcca |
324 |
Q |
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| T |
12154945 |
tgtttatcaatttagtcccattatgttaattttaactcaaaatatttaaggtggatcaacattatacgtgatcca |
12154871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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