View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21022_high_14 (Length: 345)

Name: NF21022_high_14
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21022_high_14
NF21022_high_14
[»] chr2 (1 HSPs)
chr2 (16-345)||(42124203-42124532)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 42124203 - 42124532
Alignment:
Q  16 caatgaacggccgtgatcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124203 caatgaacggccgtgatcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagcttt 42124302  T
Q  116 tgtgaatcttccataggaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124303 tgtgaatcttccataggaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaa 42124402  T
Q  216 cctcgcggccttgtgtatcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124403 cctcgcggccttgtgtatcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagc 42124502  T
Q  316 aaggaaaagcaaaggacgtgaatcattttc 345  Q
    ||||||||||||||||||||||||||||||    
T  42124503 aaggaaaagcaaaggacgtgaatcattttc 42124532  T

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