View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21022_high_8 (Length: 392)
Name: NF21022_high_8
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 24645357 - 24644977
Alignment:
| Q |
3 |
ttgattgattattctct--aatcaatcacactatggcttcttcttctcttcatctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24645357 |
ttgattgattattctctctaatcaatcacactatggcttcttcttctcttcatctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaat |
24645258 |
T |
|
| Q |
101 |
tcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaaatcctcctcttcatgcaaaccaactacctcccgtcgcagaaccacacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
24645257 |
tcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaaatcctcctcttcatccaaaccacctacctcccgtcgcagaaccacacca |
24645158 |
T |
|
| Q |
201 |
gccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttctctcgttgagaaatcagtcaacactattcgattccttgctatcgatgccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24645157 |
gccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttctctcgttgagaaatcagtcaacactattcgattccttgctatcgatgccg |
24645058 |
T |
|
| Q |
301 |
ttgagaaagctaattcgggtcaccctggtttacccatgggttgtgctccaatgggtcacattctttacgatgaagtgatga |
381 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
24645057 |
ttgagaaagctaattcgggtcacccgggtttacccatgggttgtgctccaatgggtcacattctatacgatgaagttatga |
24644977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 52485419 - 52485799
Alignment:
| Q |
3 |
ttgattgattattctc--taatcaatcacactatggcttcttcttctcttcatctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52485419 |
ttgattgattattctctctaatcaatcacactatggcttcttcttctcttcatctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaat |
52485518 |
T |
|
| Q |
101 |
tcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaaatcctcctcttcatgcaaaccaactacctcccgtcgcagaaccacacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
52485519 |
tcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaaatcctcctcttcatccaaaccacctacctcccgtcgcagaaccacacca |
52485618 |
T |
|
| Q |
201 |
gccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttctctcgttgagaaatcagtcaacactattcgattccttgctatcgatgccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52485619 |
gccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttctctcgttgagaaatcagtcaacactattcgattccttgctatcgatgccg |
52485718 |
T |
|
| Q |
301 |
ttgagaaagctaattcgggtcaccctggtttacccatgggttgtgctccaatgggtcacattctttacgatgaagtgatga |
381 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
52485719 |
ttgagaaagctaattcgggtcacccgggtttacccatgggttgtgctccaatgggtcacattctatacgatgaagttatga |
52485799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 358
Target Start/End: Complemental strand, 8338537 - 8338428
Alignment:
| Q |
249 |
tctctcgttgagaaatcagtcaacactattcgattccttgctatcgatgccgttgagaaagctaattcgggtcaccctggtttacccatgggttgtgctc |
348 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| || | ||| | ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8338537 |
tctctcgttgagaaatcagtcaacacgatccgtttcctcgcggttgattcggttgaaaaagccaattcgggtcatcctggtttacctatgggttgtgctc |
8338438 |
T |
|
| Q |
349 |
caatgggtca |
358 |
Q |
| |
|
|||||||||| |
|
|
| T |
8338437 |
caatgggtca |
8338428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University