View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21022_low_1 (Length: 629)
Name: NF21022_low_1
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 257 - 612
Target Start/End: Original strand, 44516052 - 44516419
Alignment:
| Q |
257 |
gtggtggtggtttatttttggtttgctgtttgaatagggagtggctttgattgtttagttatcttttggttagtgcttttgttatcaggtgtttggtatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
44516052 |
gtggtggtggtttatttttggtttgctgtttgcatagggagtggctttgattgtttagttatcttttggtcagtgcttttgttatcgggtgtttggtatg |
44516151 |
T |
|
| Q |
357 |
ctgttggttcctgttgctacttgtattgttttact--tgtggcacttcctgtatctattttcacacacaaagtatac--------cttatacttgtgttg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
44516152 |
ctgttggttcctgttgctacttgtattgttttacttgtgtggcacttcctgtatctattttcacacacaaagtataccttgtacacttgtacttgtgttg |
44516251 |
T |
|
| Q |
447 |
tgtttcaattcaataaaatttgtctttgctctt--nnnnnnnnngaaagattgtgattgatatttttctgttttttaccttttgcaggtgtactggggac |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44516252 |
tgtttcaattcaataaaatttgtctttgctcttcaaaaaaaaaataaagattgtgattgatatttttctgttttttaccttttgcaggtgtactggggac |
44516351 |
T |
|
| Q |
545 |
ctccagtcccattccaccttacaaatcacactgtgcttctagtaggatgtggagtgcataacaaaact |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44516352 |
ctccagtcccattccaccttacaaatcacactgtgcttctagtaggatgtggagtgcataacaaaact |
44516419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 44515780 - 44516025
Alignment:
| Q |
1 |
tttcagtgatgttgtcttggtgattctgatctgtttctgtttgagcagaattataggtgtccgtctcttgtttgtgtttactttattttggaggatcttc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44515780 |
tttcagtgatgttgtcttagtgattctgatccgtttctgtttgagcagaattataggcgtctgtctcttgtttgtgtttactttattttgggggatcttc |
44515879 |
T |
|
| Q |
101 |
ggattttgttttcatgaggtacctttgttgttggttgtgatttaaactgtggttcttgagttttaagttgcagttcagctattcannnnnnngtcagatt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
44515880 |
ggattttgttttcatgaggcacctttgttgttggttgtgatttaaactgtggttcctaagttttaatttgcagttcagctattcatttttttgtcagatt |
44515979 |
T |
|
| Q |
201 |
gggtttgagtacaggtcggagcatcgcttatggagccattgtgata |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44515980 |
gggtttgagtacaggtcggagcatcgcttatggagccattgtgata |
44516025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 345 - 479
Target Start/End: Original strand, 1917806 - 1917940
Alignment:
| Q |
345 |
gtgtttggtatgctgttggttcctgttgctacttgtattgttttacttgtggcacttcctgtatctattttcacacacaaagtataccttatacttgtgt |
444 |
Q |
| |
|
||||||||| |||| |||||||||| || | ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
1917806 |
gtgtttggtttgctattggttcctggtgtttcttgtattgttttgcttgtgtcacttcctgtatctattttcacacacagagtatatcttgtacttgtgt |
1917905 |
T |
|
| Q |
445 |
tgtgtttcaattcaataaaatttgtctttgctctt |
479 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| |
|
|
| T |
1917906 |
tgtgtttcaatgcaataatatttgtctttgctctt |
1917940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 1917469 - 1917618
Alignment:
| Q |
10 |
tgttgtcttggtgattctgatctgtttctgtttgagcagaattataggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggattttgt |
109 |
Q |
| |
|
||||||||||||| |||||||| | ||||| |||| |||| || ||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
1917469 |
tgttgtcttggtgtttctgatccttgtctgtatgagtagaagtacaggtgtccgtctcttgtttgtgtttgctttagtttgg-ggatctttggattttgt |
1917567 |
T |
|
| Q |
110 |
tttcatgaggtacctttgttgttggttgtgatttaaactgtggttcttgag |
160 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||| ||||||||||||| |||| |
|
|
| T |
1917568 |
ttttgtgaggcatatttattgttggtcgtgatctaaactgtggttcctgag |
1917618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 29121090 - 29120889
Alignment:
| Q |
10 |
tgttgtcttggtgattctgatctgtttctgtttgagcagaattataggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggattttgt |
109 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||||| || |||||||| ||| |||||||||||| ||||| ||| ||||||| | ||||||| |
|
|
| T |
29121090 |
tgttgtcttggtgtttctgatccttgtctgtttgagcagaagtacaggtgtccttcttttgtttgtgtttgctttagtttaagggatctttgaattttgt |
29120991 |
T |
|
| Q |
110 |
tttcatgaggtacctttgttgttggttgtgatttaaactgtggttcttgagttttaagttgcagttcagctattcannnnnnngtcagattgggtttgag |
209 |
Q |
| |
|
||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
29120990 |
ttttgtgaggcatctttgttgttggttgtgatttaaactgtggtttttgagattttatttgcagttcagctgttcgttttttagtcagattgggtttgag |
29120891 |
T |
|
| Q |
210 |
ta |
211 |
Q |
| |
|
|| |
|
|
| T |
29120890 |
ta |
29120889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 345 - 479
Target Start/End: Original strand, 32252499 - 32252633
Alignment:
| Q |
345 |
gtgtttggtatgctgttggttcctgttgctacttgtattgttttacttgtggcacttcctgtatctattttcacacacaaagtataccttatacttgtgt |
444 |
Q |
| |
|
||||||||| ||||||||||| || || | ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
32252499 |
gtgtttggtttgctgttggttattggtgtttcttgtattgttttgcttgtgtcactttctgtatctattttcacacacaaagtatacattgtatttgtgt |
32252598 |
T |
|
| Q |
445 |
tgtgtttcaattcaataaaatttgtctttgctctt |
479 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
32252599 |
tgtgttttaatgcaataatatttgtctttgctctt |
32252633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 460
Target Start/End: Original strand, 35105754 - 35105829
Alignment:
| Q |
381 |
attgttttacttgtggcacttcctgtatctattttcacacacaaagtataccttatacttgtgttgtgtttcaattcaat |
460 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
35105754 |
attgttttgcttgtttcacttcatgtatctgttttcacacacaaagtatacctt----gtgtgttgtgtttcatttcaat |
35105829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University