View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_low_10 (Length: 389)
Name: NF21022_low_10
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_10 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 39643 - 39319
Alignment:
| Q |
19 |
agaggactaggccaaaaccctgaaacagcatagagaacaacaacgagcgacaaaatcaacatccttattcccataatgcccagagattaggcatgaaagg |
118 |
Q |
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| T |
39643 |
agaggactaggccaaaaccctaaaaaagcataga--acaacaacgagccacaaaatcaatatccttac-cccataatgcccagagattaggcatgaaagg |
39547 |
T |
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| Q |
119 |
gtctctattattcatacatactttcgtaagctatacccttgaaattccagnnnnnnntcttcattaggtgcaggcgggggaccttgagagcgggtttgat |
218 |
Q |
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| T |
39546 |
gtctctattattcatacataatttcgtaagctatacccttgaaattccagaaaaaaatcttcattaggtgcaggagggggaccttgagagcgggtttgat |
39447 |
T |
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| Q |
219 |
atgcctttgtaattgnnnnnnnnnnnnnnactctttgataaataagcagtaaatgggacttctgttgacgcaccttgaattgataaatattgtacaaaat |
318 |
Q |
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| T |
39446 |
atgcctttgtaattg----ttttttttttactctttgataaataagtagtaaatgggacttctgttgacgcaccttgaatcgataaatactgtacaagat |
39351 |
T |
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| Q |
319 |
ccatttctctatgtaaatttggatcaataggg |
350 |
Q |
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| T |
39350 |
ccatttctctatgtaaatttggatcaataggg |
39319 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 29478913 - 29478977
Alignment:
| Q |
100 |
agagattaggcatgaaagggtctctattattcatacatactttcgtaagctatacccttgaaatt |
164 |
Q |
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| T |
29478913 |
agagattaggctttaaagggtctttattattcatacaaaattttgtaacctatacccttgaaatt |
29478977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 24575584 - 24575538
Alignment:
| Q |
88 |
cccataatgcccagagattaggcatgaaagggtctctattattcata |
134 |
Q |
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| T |
24575584 |
cccatagtgcccaaagattaggcattaaagggtctctattgttcata |
24575538 |
T |
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