View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_low_16 (Length: 297)
Name: NF21022_low_16
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 32230791 - 32230940
Alignment:
| Q |
18 |
ggaacatcaaaatacatacgtggaatgtgataccgcatatgtttatttgtctttatacttatgtcttacttttgattttctaaaagtaacaaacattgag |
117 |
Q |
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| T |
32230791 |
ggaacattaaaatacatacttggaatgtgataccgcatatgtttatttatctttatacttgtgtcttacttttgattttctaaaagtaacaaacattgag |
32230890 |
T |
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| Q |
118 |
aaaatacacataaaaatcaaagggcacaatatttgacatcaaagttttaa |
167 |
Q |
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| T |
32230891 |
aatatacacataaaaatcaaagggcacaatatttgacatcaaagttttaa |
32230940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 32230981 - 32231101
Alignment:
| Q |
173 |
catattatagaaagtatgatcaccaattaaattagcatttcattttgcaaattgttaaatatatcatctaaattataaaatgtcacttaaaatggtctca |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230981 |
catattatagaaagtatgatcaccaattaaattagcatttcattttgcaaattgttaaatatatcatctaaattataaaatgtcacttaaaatggtctca |
32231080 |
T |
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| Q |
273 |
atttgttgagaataatctacc |
293 |
Q |
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| T |
32231081 |
gtttgttgagaataatatacc |
32231101 |
T |
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