View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21022_low_19 (Length: 275)

Name: NF21022_low_19
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21022_low_19
NF21022_low_19
[»] chr7 (21 HSPs)
chr7 (6-261)||(8546685-8546941)
chr7 (6-261)||(8538814-8539068)
chr7 (6-180)||(8582673-8582847)
chr7 (6-180)||(8572600-8572774)
chr7 (6-206)||(8577299-8577504)
chr7 (6-94)||(7876838-7876926)
chr7 (74-157)||(8560773-8560856)
chr7 (12-88)||(8647717-8647793)
chr7 (4-88)||(13332160-13332244)
chr7 (9-88)||(6790423-6790502)
chr7 (6-64)||(8568848-8568906)
chr7 (4-94)||(10493005-10493095)
chr7 (39-97)||(27829346-27829404)
chr7 (6-91)||(8635506-8635591)
chr7 (4-88)||(3148379-3148463)
chr7 (4-88)||(8668473-8668557)
chr7 (9-88)||(8591411-8591490)
chr7 (4-157)||(8660252-8660405)
chr7 (42-91)||(17261438-17261487)
chr7 (42-88)||(8602780-8602826)
chr7 (4-157)||(1302319-1302472)
[»] chr8 (1 HSPs)
chr8 (6-187)||(12529878-12530060)
[»] chr2 (8 HSPs)
chr2 (39-157)||(7543320-7543438)
chr2 (39-94)||(12000376-12000431)
chr2 (4-91)||(12257921-12258008)
chr2 (39-101)||(12244400-12244462)
chr2 (9-85)||(43626333-43626409)
chr2 (4-91)||(16656607-16656694)
chr2 (39-157)||(14705506-14705624)
chr2 (39-91)||(12235841-12235893)
[»] chr4 (4 HSPs)
chr4 (4-88)||(9323074-9323158)
chr4 (4-88)||(9377553-9377637)
chr4 (4-94)||(35133462-35133552)
chr4 (40-88)||(9335046-9335094)
[»] chr5 (2 HSPs)
chr5 (9-88)||(42554197-42554276)
chr5 (39-88)||(28220990-28221039)
[»] chr1 (2 HSPs)
chr1 (4-97)||(4677541-4677634)
chr1 (4-85)||(15596067-15596148)
[»] chr6 (1 HSPs)
chr6 (9-76)||(11278609-11278676)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 8546685 - 8546941
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546685 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 8546784  T
Q  106 tctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcata-ttttttgccattgtgcttcaagtgaatga 204  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  8546785 tctgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatttttttgccattgtgcttcaagtgaatga 8546884  T
Q  205 aaccgtttgtagagaagatttgaattggcttcaaaatttggaagatatatagcactg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546885 aaccgtttgtagagaagatttgaattggcttcaaaatttggaagatatatagcactg 8546941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 8538814 - 8539068
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 105  Q
    |||||||||||||||||||  | ||| |||||  | ||| |||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||    
T  8538814 ttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctccacacgatcgt 8538913  T
Q  106 tctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcata-ttttttgccattgtgcttcaagtgaatga 204  Q
    | |||||| || | ||||||||||| ||||| |||||||||||||||||||||||  || |||||||||| ||||||||||||||  ||||||||||| |    
T  8538914 tttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattccgatagcagctccctcatatttttttgccattgt--ttcaagtgaatca 8539011  T
Q  205 aaccgtttgtagagaagatttgaattggcttcaaaatttggaagatatatagcactg 261  Q
    ||| ||||||| ||||||||||||||   |||| | ||||||| | |||||||||||    
T  8539012 aactgtttgtacagaagatttgaattaaattcatactttggaaaagatatagcactg 8539068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 8582673 - 8582847
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 105  Q
    |||||||||||||||||||  ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8582673 ttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatttccacacgatcgt 8582772  T
Q  106 tctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatattttt 180  Q
    | |||||| || | ||||||||||| ||||| || || |||||||||||||||||  ||| ||||| ||||||||    
T  8582773 tttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattccgattgcaaatcccttatattttt 8582847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 8572600 - 8572774
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 105  Q
    |||||||||||||| ||||  ||||| ||||| || |||||||||||||| || |||||| |||||||||| |||||||| |||||||| |||||||| |    
T  8572600 ttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgatttcaacacgatcat 8572699  T
Q  106 tctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatattttt 180  Q
    | |||||| || | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8572700 tttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatattttt 8572774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 8577299 - 8577504
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 105  Q
    ||||||||||| |||||||  ||||| ||||| || ||||||||||||||||| || ||| ||||||||||||||||||| || ||||| ||||||||||    
T  8577299 ttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctacacgatcgt 8577398  T
Q  106 tctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatattttt-tgccattg----tgcttcaagtga 200  Q
    | || ||  || ||||||||||||| |||||||||||||||||||||||||| ||  |||||||||| ||||||| | ||||||    ||||||||||||    
T  8577399 tttgttcatgccatactccaacacatgagtaagtcgtgccaaggtcaattccaatggcaactccctcgtatttttcttccattgagcttgcttcaagtga 8577498  T
Q  201 atgaaa 206  Q
    ||||||    
T  8577499 atgaaa 8577504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 7876926 - 7876838
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 94  Q
    ||||||||||||||||||| ||||||   ||| |||||||||||| |||||||||||||| |||| ||||| ||||||||||| |||||    
T  7876926 ttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttc 7876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 8560773 - 8560856
Alignment:
Q  74 ttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 157  Q
    |||||||||||| |||||||||||||||| ||| |||||| || ||||||||||||| ||||| || || ||||||||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattcc 8560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 8647717 - 8647793
Alignment:
Q  12 gcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    ||||||||||||| ||||||   ||  |||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  8647717 gcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaat 8647793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 13332244 - 13332160
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||||||||||||||||||||  |||||   |||  ||||||||||| |||||||||| ||| | ||||||||||||||||||||    
T  13332244 tcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaat 13332160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 6790423 - 6790502
Alignment:
Q  9 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    ||||||||||| |||| |||||||  ||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  6790423 gcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaat 6790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 8568848 - 8568906
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgt 64  Q
    |||||||||||||||||||  ||||| || || ||||||||||||||||||||||||||    
T  8568848 ttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 10493095 - 10493005
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 94  Q
    |||| ||||||||||| |||| ||||||   |||  ||||||||||| |||||||||| ||| | |||||||||||||||||||| |||||    
T  10493095 tcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttc 10493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 27829404 - 27829346
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccac 97  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||| || |||||    
T  27829404 gtgaaagcaacacaagaaggtgttgtcttgttgccttgttcattgtgaataatctccac 27829346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 8635591 - 8635506
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 91  Q
    ||||||||||||||||||| |||||| |  |  |||||||||||||||||||||||  || |||| ||||| |||||||| |||||    
T  8635591 ttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtggatgat 8635506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 3148379 - 3148463
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||| ||||||||||||| || ||||||   ||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  3148379 tcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 3148463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 8668473 - 8668557
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||| |||||||| ||||||| ||||||   |||  ||||||||||| ||||||||||| ||  |||||||||||||||||||||    
T  8668473 tcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaat 8668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 8591411 - 8591490
Alignment:
Q  9 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||||||||||||||| ||||||   ||| || ||||||||| ||||||||||  || | ||||||||||||||||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaat 8591490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 8660252 - 8660405
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatc 103  Q
    |||| |||||||||||||||| ||||||    |  |||||||||||| | ||||||||||||||||||||||| || ||||  ||||| || || ||||     
T  8660252 tcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgatt 8660351  T
Q  104 gttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 157  Q
    ||  | ||||||| | ||  |||||||||| || || || |||||||| |||||    
T  8660352 gtgattctccagccacacagcaacacacgaataggttgttccaaggtctattcc 8660405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 17261438 - 17261487
Alignment:
Q  42 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 91  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  17261438 aaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgat 17261487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 8602780 - 8602826
Alignment:
Q  42 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    ||||||||| ||||||| || ||| ||||||||||||||||||||||    
T  8602780 aaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaat 8602826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 1302319 - 1302472
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatc 103  Q
    |||| ||||||||||| |||| ||||||   ||  |||||||||||| |||| |||||||||||||| ||||| || ||||  ||||| || || | ||     
T  1302319 tcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctatt 1302418  T
Q  104 gttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 157  Q
    ||  | ||||||| | ||  |||||||||| ||||| || |||||||| |||||    
T  1302419 gtgattctccagccacacagcaacacacgaataagtagttccaaggtctattcc 1302472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 12529878 - 12530060
Alignment:
Q  6 ttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgt 105  Q
    |||||||||| ||||||||  || || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  12529878 ttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccacacgatcag 12529977  T
Q  106 tctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcata-ttttttgccatt 187  Q
    | |||||  || ||||||||||||| |||||||| |||||||| |||||||| ||  ||||||| ||||| ||||||||||||    
T  12529978 tttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttcatacttttttgccatt 12530060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 7543320 - 7543438
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaag 138  Q
    |||||||||||| |||||||||||||| |||| ||||| || |||||||||||||| || |||| ||  || ||| || ||||| ||||||| ||||| |    
T  7543320 gtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacg 7543419  T
Q  139 tcgtgccaaggtcaattcc 157  Q
    | ||||||||||| |||||    
T  7543420 ttgtgccaaggtctattcc 7543438  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 12000376 - 12000431
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 94  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  12000376 gtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttc 12000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 12258008 - 12257921
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 91  Q
    |||| |||||||||||||||| ||||||    || || ||||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  12258008 tcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgat 12257921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 12244462 - 12244400
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacga 101  Q
    ||||||||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||||    
T  12244462 gtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacga 12244400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 43626333 - 43626409
Alignment:
Q  9 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 85  Q
    |||||||||||||||| |||||||   || ||||||| |||| |||||||||| ||| |||||||||| ||||||||    
T  43626333 gcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtg 43626409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 16656694 - 16656607
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 91  Q
    |||| ||||||||||| |||| ||||||   ||  |||||||||||| |||||||||||||| ||||||| || |||||||| |||||    
T  16656694 tcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgat 16656607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 14705506 - 14705624
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaag 138  Q
    |||||||||||| ||||||| |||||| | || |||||||| |||||||||||||| || ||||  |  || ||| || ||||| ||||||| ||||| |    
T  14705506 gtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacg 14705605  T
Q  139 tcgtgccaaggtcaattcc 157  Q
    | || |||||||| |||||    
T  14705606 ttgtaccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 12235841 - 12235893
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 91  Q
    |||||||||||| ||||||| |||||| | || |||||||| |||||||||||    
T  12235841 gtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgat 12235893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 9323158 - 9323074
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||| |||||||||||||||| ||||||   |||  ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9323158 tcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9323074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 9377637 - 9377553
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||| |||||||||||||||| ||||||   |||  ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9377637 tcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9377553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 35133462 - 35133552
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 94  Q
    |||| ||||||||||| |||| ||||||    || |||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||    
T  35133462 tcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatttc 35133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 9335094 - 9335046
Alignment:
Q  40 tgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9335094 tgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9335046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 42554276 - 42554197
Alignment:
Q  9 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||||||||||||||| |||||    ||  || ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaat 42554197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 28220990 - 28221039
Alignment:
Q  39 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 88  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  28220990 gtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaat 28221039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 4677634 - 4677541
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccac 97  Q
    |||| ||||||| |||||||| ||||||   ||  || ||||||||| ||||||||||||||||||| ||||| ||||||| ||| || |||||    
T  4677634 tcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac 4677541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 15596067 - 15596148
Alignment:
Q  4 tcttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 85  Q
    |||| |||||||||||||||| ||||||   ||| ||||||| |||| ||||||||||  || |||||||||| ||||||||    
T  15596067 tcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtg 15596148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 11278609 - 11278676
Alignment:
Q  9 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttg 76  Q
    ||||||||||||||||  ||||  || ||| |||| ||||||||||||||||||||| |||| |||||    
T  11278609 gcagcatcaccaatcattctttcagagtttttgaatgcaacacaagaaggtgttgttctgttcccttg 11278676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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