View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_low_2 (Length: 587)
Name: NF21022_low_2
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Original strand, 39968224 - 39968784
Alignment:
| Q |
13 |
aatatgagtgtaatgaaaaagcacatagcatgttgcaagcaaaatatcaaacatgtaacacaaggaggcaagaaaaagaaacacaaatcaacgaccaaaa |
112 |
Q |
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| T |
39968224 |
aatatgagtgtaatgaaaaagcacatagcatgttgcaagcaaaatatcaaacatgtaacacaaggaggcaagaaaaagaaacacaaatcaacgaccaaaa |
39968323 |
T |
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| Q |
113 |
tggtttcaaaaacaataagaatatcagcaaaggaaaataatacattgggaaattttaggcaaccccaccatggtatgtcacttgtaaacgttgcaataaa |
212 |
Q |
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| T |
39968324 |
tggtttgaaaaacaataagaatatcagcaaaggaaaataatacattgggaaattttaggcaaccccaccatgttatgtcacttgtaaacgttgcaataaa |
39968423 |
T |
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| Q |
213 |
catccttgtgacgctttcaataggatgaataagttcagtgagtgatatagaattatcaagacctgatgacgagtcatggttcatatactcaaggcggttc |
312 |
Q |
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| T |
39968424 |
catccttgtgacgctttcaataggatgaataagttcagtgagtgatatagaattatcaagacctgatgacgagtcatggttcatatactcaaggcggttc |
39968523 |
T |
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| Q |
313 |
aaataaaaattcttcccaggaggtgggtaaaaatcatgttgatttgtgccctgctcattatcactatcagaagaaacattatccttttctatagaatctg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39968524 |
aaataaaaattcttcccaggaggtgggtaaaaatcatgttgatttgtgccctgctcattatcactatcagaagaaacattatccttttctatagaatctg |
39968623 |
T |
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| Q |
413 |
acactgtcagattcaaattcttatcaccaaaagcattgacataatcaacccccaaatccccttttcgacaaattttttcaccattttcctccaaatcaat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39968624 |
acactgtcagattcaaattcttatcaccaaaagcattgacataatcaacccccaaatccccttttcgacaaaaattttcaccattttcctccaaatcaat |
39968723 |
T |
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| Q |
513 |
ccctttacttttacaaagtaaacccgaactagactgcacaacatcaatgccagtatcttcc |
573 |
Q |
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| T |
39968724 |
ccctttacttttacaaagtaaacccgaactagactgcacaacatcaatgccagtatcttcc |
39968784 |
T |
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