View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_low_20 (Length: 273)
Name: NF21022_low_20
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 50087637 - 50087395
Alignment:
| Q |
14 |
gaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaa |
113 |
Q |
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| T |
50087637 |
gaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaa |
50087538 |
T |
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| Q |
114 |
agttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaa |
213 |
Q |
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| T |
50087537 |
agttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaa |
50087438 |
T |
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| Q |
214 |
caattactttttctaatcacactcattggtagaaaaatcttta |
256 |
Q |
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| T |
50087437 |
caattactttttctcatcacactcattggtagaaaaatattta |
50087395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 23271897 - 23271670
Alignment:
| Q |
15 |
aagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaa |
114 |
Q |
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| T |
23271897 |
aagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaa |
23271798 |
T |
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| Q |
115 |
gttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaac |
214 |
Q |
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| T |
23271797 |
gttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaac |
23271698 |
T |
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| Q |
215 |
aattactttttctaatcacactcattgg |
242 |
Q |
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| T |
23271697 |
aattactctttcttttcacactcattgg |
23271670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 241
Target Start/End: Complemental strand, 33446775 - 33446615
Alignment:
| Q |
82 |
tgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttc-aaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataaca |
180 |
Q |
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||||||||||| |||||||||||||||| |||||||||||| ||| ||| | | ||||||||||||| | ||| |||||| | ||||||||||||| | |
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| T |
33446775 |
tgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggcaatagtaggagaagcattgaaatcaaatataata |
33446676 |
T |
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| Q |
181 |
acaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattg |
241 |
Q |
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|| || || | ||||||| | || | |||| ||||||| || ||||| ||||||| |||| |
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| T |
33446675 |
actattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattg |
33446615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 26453081 - 26453149
Alignment:
| Q |
34 |
gttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagac |
102 |
Q |
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| T |
26453081 |
gttcatgttgtgaggactcataaaggtgctgatgataaagcatttaagtgtgtttatcaagaacaagac |
26453149 |
T |
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