View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_low_22 (Length: 216)
Name: NF21022_low_22
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 18977323 - 18977138
Alignment:
| Q |
14 |
gcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagaccgattagaagaaacgattcttgaataagtggt |
113 |
Q |
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| T |
18977323 |
gcaaaggagcagccaattactcttctaggtgtgaataattggtgactgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt |
18977224 |
T |
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| Q |
114 |
ggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattct |
199 |
Q |
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| T |
18977223 |
ggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattct |
18977138 |
T |
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Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 24934151 - 24933966
Alignment:
| Q |
14 |
gcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagaccgattagaagaaacgattcttgaataagtggt |
113 |
Q |
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||||||||||| ||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24934151 |
gcaaaggagcaaccaattactcttctaggtgtgaataattggtgattttatagtagataatttgagaccgattagaagaaacgattcctgaataagtggt |
24934052 |
T |
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| Q |
114 |
ggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattct |
199 |
Q |
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| T |
24934051 |
ggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattct |
24933966 |
T |
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Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 9366219 - 9366405
Alignment:
| Q |
14 |
gcaaaggagcagccaattactcttctaggtgtggatgattggtgattgtatagcagataatttgagaccgattagaagaaacgattcttgaataagtggt |
113 |
Q |
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|||||||||||||||||||||||||| |||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9366219 |
gcaaaggagcagccaattactcttctgggtgtgaataattggtcattgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt |
9366318 |
T |
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| Q |
114 |
ggttgattacattgctggtctttcaagcactaattgatac-aaagcgatattcatttaccttaaatgaaaataaagagcatgattct |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9366319 |
ggttgattacaatgctggtctttcaagcactaattgatacaaaagcgatattcatttaccttaaatgaaaataaagagcatgattct |
9366405 |
T |
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