View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21022_low_3 (Length: 517)

Name: NF21022_low_3
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21022_low_3
NF21022_low_3
[»] chr4 (3 HSPs)
chr4 (35-488)||(17481448-17481904)
chr4 (77-145)||(34867880-34867948)
chr4 (151-242)||(44445457-44445552)
[»] chr1 (1 HSPs)
chr1 (67-247)||(40858246-40858429)
[»] chr5 (4 HSPs)
chr5 (67-163)||(5151864-5151959)
chr5 (67-238)||(18181094-18181268)
chr5 (69-112)||(7173567-7173610)
chr5 (182-230)||(9735255-9735303)
[»] chr7 (1 HSPs)
chr7 (69-248)||(22303346-22303528)
[»] scaffold0137 (1 HSPs)
scaffold0137 (36-175)||(20683-20820)
[»] chr8 (2 HSPs)
chr8 (72-174)||(4933435-4933537)
chr8 (69-123)||(4933927-4933981)
[»] chr3 (1 HSPs)
chr3 (36-238)||(3917199-3917402)
[»] chr6 (1 HSPs)
chr6 (182-230)||(11089243-11089291)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 35 - 488
Target Start/End: Original strand, 17481448 - 17481904
Alignment:
Q  35 ttaaacgaacaaattatgtaaacaaagcatgcacaaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatctta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17481448 ttaaacgaacaaattatgtaaacaaagcatgcacaaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatctta 17481547  T
Q  135 atattaagaatggggtaaaaagtaggtttggagagcaaattgttatagaaactttaaaacatcaaaataacataactgacagttttgctcactgttttgt 234  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17481548 atatcaagaatggggtaaaaagtaggtttggagagcaaattgtcatagaaactttaaaacatcaaaataacgtaactgacagttttgctcactgttttgt 17481647  T
Q  235 catataaattagtcttctaggagatatataactccctaaccctcggggacgtatctattagatgtagatattagagataaaaacagaattttgaagtgta 334  Q
    |||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  17481648 catataaaatagtcttctggaagatatataactccctaaccctcgggtacgtatctattagatgtagatattataggtaaaaacagaattttgaagtgta 17481747  T
Q  335 taagagctcctgtcaactgtcaaattgttttgtaga--acatgggtttaattcat--gtgaaacaattcttacctaaactttatttacctcttagttgaa 430  Q
    ||||| |||| | |||||||||||||||||||||||  ||||||||| |||||||  |||||||||||||  ||||||||||||||||||||||||||||    
T  17481748 taagaactcc-gccaactgtcaaattgttttgtagaacacatgggttcaattcatgggtgaaacaattctcgcctaaactttatttacctcttagttgaa 17481846  T
Q  431 ctctagattaccggagtttctttccgttgagaatcagagggttaactcaaacataaaa 488  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17481847 ctccagattaccggagtttctttccgttgagaatcagagggttaactcaaacataaaa 17481904  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 34867948 - 34867880
Alignment:
Q  77 gtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatcttaatattaagaat 145  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||    
T  34867948 gtcatagattacttaaaccaaatacataggttcataaccaaataaatcacatagcttaacatcaagaat 34867880  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 44445457 - 44445552
Alignment:
Q  151 aaaaagtaggtttggagagcaaat----tgttatagaaactttaaaacatcaaaataacataactgacagttttgctcactgttttgtcatataaa 242  Q
    ||||||||||||||||||||||||    ||   | ||||||||||||||||| |||||| ||||||| | ||||||||| |||| |||||||||||    
T  44445457 aaaaagtaggtttggagagcaaatgacatggctttgaaactttaaaacatcacaataacgtaactgaaaattttgctcattgttctgtcatataaa 44445552  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 40858246 - 40858429
Alignment:
Q  67 acaaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatcttaatattaagaatggggtaaaaagtaggtttgga 166  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||||| || || ||| ||||||||||| |||| |||    
T  40858246 acaaatatttgtcataaattacttaaatcaaatacataggtttataaccaagcaaattatatagcttaacatcaataattgggtaaaaagttggttagga 40858345  T
Q  167 gagcaaat---tgttatagaaactttaaaacatcaaaataacataactgacagttttgctcactgttttgtcatataaattagt 247  Q
     | |||||   || | |  ||  ||| |||||||||||||||  | |||||||||||||||||   | ||||||||||| ||||    
T  40858346 aaacaaatgggtggtttgaaattttttaaacatcaaaataacgcatctgacagttttgctcacgactctgtcatataaaatagt 40858429  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 5151959 - 5151864
Alignment:
Q  67 acaaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatcttaatattaagaatggggtaaaaagtaggttt 163  Q
    ||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||| ||||| ||||| || |||||| |||| ||||||||||||    
T  5151959 acaaatgtttgtcataa-ttacttaaaccaaatacatgggttaataatcaaacaaataacatagcttaacatcaagaattgggtgaaaagtaggttt 5151864  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 18181268 - 18181094
Alignment:
Q  67 acaaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatcttaatattaagaatggggtaaaaagtaggtttgga 166  Q
    |||||||||||||||||||||||||||||||||||||| |||||  || ||| ||||  |||| |||||  | |||||| |||| |||||||||||| ||    
T  18181268 acaaatgtttgtcataaattacttaaaccaaatacataagttcactactaaataaatctcatagcttaacgtcaagaattgggtgaaaagtaggtttaga 18181169  T
Q  167 gagcaaat----tgttatagaaactttaaaacatcaaaataacataactgacagttttgctcactgttttgtcata 238  Q
    ||||| ||    |  | | |||||||| ||||||||||||||  |||||||||  |||||||| |||||| |||||    
T  18181168 gagcatatatggtcgtttggaaactttgaaacatcaaaataatgtaactgaca-atttgctcattgttttctcata 18181094  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 7173610 - 7173567
Alignment:
Q  69 aaatgtttgtcataaattacttaaaccaaatacataggttcata 112  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||    
T  7173610 aaatatttgtcacaaattacttaaaccaaatacataggtccata 7173567  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 9735303 - 9735255
Alignment:
Q  182 gaaactttaaaacatcaaaataacataactgacagttttgctcactgtt 230  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||    
T  9735303 gaaactttaaaacactaaaataacgtaactgatagttttgttcactgtt 9735255  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 248
Target Start/End: Original strand, 22303346 - 22303528
Alignment:
Q  69 aaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacatatcttaatattaagaatggggtaaaaagtaggtttggaga 168  Q
    |||| |||| ||||||||||||||  ||||||||||||||| |||||||| ||||||||||  |||| || |||||   ||| ||||||||||||||| |    
T  22303346 aaatatttggcataaattacttaagtcaaatacataggttcctaaccaaataaattacatagtttaacatcaagaactaggtgaaaagtaggtttggata 22303445  T
Q  169 gcaaat----tgttatagaaactttaaaacatcaaaataacataactgacagttttgctcactgttttgtcatataaattagtc 248  Q
    ||||||    || | |  ||||||| |||||  |||||||| ||||| |||  |||||||| ||| ||||||| ||||||||||    
T  22303446 gcaaataggatggtttgaaaactttgaaacactaaaataacgtaactaaca-atttgctcattgtgttgtcatgtaaattagtc 22303528  T

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Target: scaffold0137 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 20683 - 20820
Alignment:
Q  36 taaacgaacaaattatgtaaacaaagcatgcacaaatgtttgtcataaattacttaaaccaaatacataggttca----taaccaaacaaattacatatc 131  Q
    |||||||||||||||| |||| |||| |    |||||||| ||||||| |||||||||||||||  |||||||||    ||||||||| |||||||||||    
T  20683 taaacgaacaaattatttaaaaaaagta----caaatgttcgtcataagttacttaaaccaaatttataggttcatatctaaccaaacgaattacatatc 20778  T
Q  132 ttaatattaagaatggggtaaaaagtaggtttggagagcaaatt 175  Q
    |||| || |||||| | || ||||||  ||||||| ||||||||    
T  20779 ttaacatcaagaattgagtgaaaagt--gtttggaaagcaaatt 20820  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 4933537 - 4933435
Alignment:
Q  72 tgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaattacata-tcttaatattaagaatggggtaaaaagtaggtttggagagc 170  Q
    ||||||| ||||| ||||| ||||||||||||  |||||||| ||||||||||||||| |||| | || |||||| |||| ||||| ||||||| |||||    
T  4933537 tgtttgttataaagtacttgaaccaaatacatttgttcataatcaaacaaattacatagtctt-acatcaagaatcgggtgaaaaggaggtttgaagagc 4933439  T
Q  171 aaat 174  Q
    ||||    
T  4933438 aaat 4933435  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 4933927 - 4933981
Alignment:
Q  69 aaatgtttgtcataaattacttaaaccaaatacataggttcataaccaaacaaat 123  Q
    ||||||| ||||||||||||||||| ||||| |||| |||||||||||| |||||    
T  4933927 aaatgttagtcataaattacttaaatcaaatgcataagttcataaccaagcaaat 4933981  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 3917199 - 3917402
Alignment:
Q  36 taaacgaacaaattatgtaaacaaagcatgcacaaatgtttgtcataaattacttaaaccaaatacataggt-----tcataaccaaacaaattacatat 130  Q
    ||||||||||||||||||||| |||| |    |||||||| ||||||| ||||||||| |||||  ||||||     |||||||||||| ||||||||||    
T  3917199 taaacgaacaaattatgtaaaaaaagta----caaatgttcgtcataagttacttaaatcaaatttataggttcatatcataaccaaacgaattacatat 3917294  T
Q  131 cttaatattaagaatggggtaaaaagtaggtttggagagcaaat----tgttatagaaactttaaaacatcaaaataacataactgacagttttgctcac 226  Q
    ||||| || |||||| |  | ||||||  ||||||| |||||||    || | | |||||||| ||||| |||||||  || ||||| ||||||||||||    
T  3917295 cttaacatcaagaattgaatgaaaagt--gtttggaaagcaaattatgtggtttggaaactttgaaacaccaaaata--atgactgatagttttgctcac 3917390  T
Q  227 tgttttgtcata 238  Q
    || | |||||||    
T  3917391 tgatctgtcata 3917402  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 11089243 - 11089291
Alignment:
Q  182 gaaactttaaaacatcaaaataacataactgacagttttgctcactgtt 230  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  11089243 gaaacttttaaacaccaaaataacataattgacagttttgctcattgtt 11089291  T

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